macOS
Homebrew已验证 · 100%
brew install seqtklocal Homebrew formula metadata
安装
其他安装命令
Linux
Nix已验证 · 92%
nix profile install nixpkgs#seqtknixpkgs package indexes · pkgs/by-name/se/seqtk/package.nix · 来源: api.github.com
概览
软件包摘要
Toolkit for processing sequences in FASTA/Q formats
历史
项目历史与用法
Seqtk is a lightweight command-line toolkit for common transformations and selections on FASTA and FASTQ biological-sequence files.
项目历史
Seqtk was created by Heng Li as a fast, lightweight toolkit for manipulating FASTA and FASTQ sequence data. Its implementation and build remain deliberately small, with zlib as its only library dependency.
采用历史
Seqtk is distributed by multiple Unix package ecosystems, including Homebrew, Debian, Ubuntu, and Nix, making its small command-line toolkit readily available in bioinformatics environments.
使用方式
Typical uses include FASTQ-to-FASTA conversion, reverse complementation, sequence or region extraction, masking, paired-read subsampling, quality trimming, and line normalization. It accepts gzip-compressed input and is commonly placed in shell pipelines.
为什么软件包爱好者会关心
Seqtk is valued as a compact, zlib-only sequence-processing utility that composes naturally with pipes and established genomics tools. Its focused executable covers many routine FASTA/FASTQ transformations without requiring a larger workflow framework.
时间线
- 2010s: Seqtk became a commonly packaged Unix command-line utility for lightweight FASTA/FASTQ processing.
Related projects
- Seqtk commonly appears alongside read aligners and other command-line genomics software that consume FASTA, FASTQ, BED, or related formats.
来源
- Official repository and README: https://github.com/lh3/seqtk
- source_facts.package-manager
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
seqtk | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-09-19
管理器版本1.5
管理器更新时间2026-09-11
本地数据OK
上游当前
检测到的最新版本v1.5
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:seqtk |
|---|---|
| 版本 | 1.5 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/seqtk |
| 主页 | https://github.com/lh3/seqtk |
| 仓库 | https://github.com/lh3/seqtk |
| 许可证 | MIT |
| 源码归档 | https://github.com/lh3/seqtk/archive/refs/tags/v1.5.tar.gz |
| 最后更新 | 2026-09-11T16:43:42Z |
| Pulse | updated |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | seqtk |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
seqtk 1.4-2
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sudo apt install seqtk- Section: science
- Architecture: amd64
- 2 依赖
- normalized package name match
- 匹配方式：Seqtk
Nix95%
seqtk
nix profile install nixpkgs#seqtk- normalized package name match
- 匹配方式：Seqtk
Ubuntu apt95%
seqtk 1.4-2
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sudo apt install seqtk- Section: universe/science
- Architecture: amd64
- 2 依赖
- normalized package name match
- 匹配方式：Seqtk
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment
- pkg.so package database
- pkgdb category and tag curation