macOS
Homebrew已验证 · 100%
brew install pymollocal Homebrew formula metadata
MacPorts已验证 · 94%
sudo port install pymolMacPorts ports tree · science/pymol/Portfile · 来源: api.github.com
安装
其他安装命令
Linux
Fedora dnf已验证 · 92%
sudo dnf install pymolFedora Rawhide package metadata · pymol · 来源: dl.fedoraproject.org
Nix已验证 · 92%
nix profile install nixpkgs#pymolnixpkgs package indexes · pkgs/by-name/py/pymol/package.nix · 来源: api.github.com
Arch Linux pacman已验证 · 92%
sudo pacman -S pymolArch Linux sync databases · pymol · 来源: geo.mirror.pkgbuild.com
openSUSE zypper已验证 · 92%
sudo zypper install python313-pymolopenSUSE Tumbleweed package metadata · python313-pymol · 来源: download.opensuse.org
Windows
Windows Package Manager已验证 · 92%
winget install --id Schrodinger.PyMOL -eWindows Package Manager source index · Schrodinger.PyMOL · 来源: cdn.winget.microsoft.com
概览
软件包摘要
Molecular visualization system
历史
项目历史与用法
PyMOL is an interactive, scriptable molecular-visualization system with an open-source foundation maintained by Schrödinger.
项目历史
PyMOL was created by Warren L. DeLano around an open-source vision for molecular visualization. It grew into a widely used environment for viewing, rendering, animating, scripting, and presenting three-dimensional molecular structures.
Following DeLano's death in 2009, Schrödinger reached an agreement with his estate in 2010 to continue development, support, sales, and stewardship of the open-source community. Schrödinger continues to maintain the open-source foundation alongside supported commercial distributions.
采用历史
PyMOL developed a broad community across academia, education, biotechnology, and pharmaceutical research. The open-source repository's project history describes a worldwide user community, while the official site characterizes it as a leading tool for customizable biomolecular imagery.
The supplied package facts show distribution across Homebrew, Debian, Fedora-family repositories, MacPorts, Nix, Arch, Ubuntu, openSUSE, and Windows Package Manager, reflecting adoption beyond Schrödinger's commercial bundles.
使用方式
Use the graphical interface for interactive molecular inspection or the PyMOL command line and Python API for selections, representations, alignment, rendering, animation, and repeatable workflows.
PyMOL loads `$HOME/.pymolrc` on startup as command-language code, or `$HOME/.pymolrc.py` for Python startup code. Sessions can preserve objects, views, representations, and animations for later presentation or collaboration.
为什么软件包爱好者会关心
PyMOL is notable for combining an interactive scientific GUI, a domain-specific command language, Python scripting, publication-quality rendering, and reproducible session files. Its coexistence as open-source code and a commercially supported product is also a distinctive packaging and sustainability model.
时间线
- 2009: Creator Warren L. DeLano died unexpectedly.
- 2010: Schrödinger agreed with DeLano's estate to continue PyMOL's development and support.
- Present stewardship: Schrödinger maintains the open-source project alongside commercially supported distributions.
Related projects
- PyMOL's Python API and command language support scripted visualization and automation.
- Schrödinger's supported distribution builds on the same open-source foundation and adds packaging, documentation, and commercial support.
来源
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 5 个平台目标。
- 安装时包含 7 个运行时依赖。
- 构建元数据列出 4 个构建依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
local files
Configuration and credential file locations
These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.
Configuration files
Config paths the tool may read or write during local use.
- Unix
~/.pymolrc~/.pymolrc.py
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
pymol | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-11-04
管理器版本3.1.0
管理器更新时间2026-10-30
本地数据OK
上游当前
检测到的最新版本v3.1.0
https://github.com/schrodinger/pymol-open-source
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:pymol |
|---|---|
| 版本 | 3.1.0 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/pymol |
| 主页 | https://pymol.org/ |
| 仓库 | https://github.com/schrodinger/pymol-open-source |
| 上游文档 | https://pymol.org/ |
| 许可证 | LicenseRef-Homebrew-cannot-represent |
| 源码归档 | https://github.com/schrodinger/pymol-open-source/archive/refs/tags/v3.1.0.tar.gz |
| 最后更新 | 2026-10-30T04:21:16Z |
| Pulse | updated |
| 依赖 | freetype, glew, libpng, netcdf, numpy, pyqt, python@3.15 |
| 构建依赖 | cmake, glm, msgpack-cxx, python-setuptools |
| macOS 提供的库 | libxml2 |
| Bottle | 可用 (于 arm64_golden_gate, arm64_linux, arm64_sequoia, arm64_tahoe, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
| 注意事项 | To generate movies, run `brew install ffmpeg`. |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | pymol |
| Version Scheme | 0 |
| Revision | 4 |
| Head Version | HEAD |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Debian apt95%
pymol 3.1.0+dfsg-1
Molecular Graphics System
sudo apt install pymol- Section: science
- Architecture: all
- 1 依赖
- 1 可选依赖
- normalized package name match
- 匹配方式：Pymol
Debian apt95%
pymol-data 3.1.0+dfsg-1
data files for PyMOL
sudo apt install pymol-data- Section: science
- Architecture: all
- Source Package: pymol
- normalized package name match
- 匹配方式：Pymol
Debian apt95%
python3-pymol 3.1.0+dfsg-1
Molecular Graphics System (Python 3 modules)
sudo apt install python3-pymol- Section: python
- Architecture: amd64
- Source Package: pymol
- 19 依赖
- normalized package name match
- 匹配方式：Pymol
Nix95%
pymol
nix profile install nixpkgs#pymol- normalized package name match
- 匹配方式：Pymol
Ubuntu apt95%
pymol 2.5.0+dfsg-1build6
Molecular Graphics System
sudo apt install pymol- Section: universe/science
- Architecture: all
- 1 依赖
- 1 可选依赖
- normalized package name match
- 匹配方式：Pymol
Ubuntu apt95%
pymol-data 2.5.0+dfsg-1build6
data files for PyMOL
sudo apt install pymol-data- Section: universe/science
- Architecture: all
- Source Package: pymol
- normalized package name match
- 匹配方式：Pymol
Ubuntu apt95%
python3-pymol 2.5.0+dfsg-1build6
Molecular Graphics System (Python 3 modules)
sudo apt install python3-pymol- Section: universe/python
- Architecture: amd64
- Source Package: pymol
- 17 依赖
- normalized package name match
- 匹配方式：Pymol
dnf95%
pymol 3.1.0-17.fc45
PyMOL Molecular Graphics System
sudo dnf install pymol- License: MIT-0 AND BSD-2-Clause AND BSD-3-Clause AND Bitstream-Vera AND OFL-1.1
- Category: Unspecified
- Architecture: x86_64
- Source Package: pymol
- 16 依赖
- 9 提供
- normalized package name match
- 匹配方式：Pymol
dnf95%
pymol+tests 3.1.0-17.fc45
Metapackage for PyMOL: tests
sudo dnf install pymol+tests- License: MIT-0 AND BSD-2-Clause AND BSD-3-Clause AND Bitstream-Vera AND OFL-1.1
- Category: Unspecified
- Architecture: x86_64
- Source Package: pymol
- 3 依赖
- 1 提供
- normalized package name match
- 匹配方式：Pymol
pacman95%
pymol 3.1.0-6
Molecular visualization system on an Open Source foundation
sudo pacman -S pymol- License: custom
- Architecture: x86_64
- 12 依赖
- normalized package name match
- 匹配方式：Pymol
zypper95%
python313-pymol 3.1.0-4.5
A Molecular Viewer
sudo zypper install python313-pymol- License: Python-2.0
- Category: Unspecified
- Architecture: x86_64
- Source Package: python-pymol
- 16 依赖
- 5 提供
- normalized package name match
- 匹配方式：Pymol
zypper95%
python314-pymol 3.1.0-4.5
A Molecular Viewer
sudo zypper install python314-pymol- License: Python-2.0
- Category: Unspecified
- Architecture: x86_64
- Source Package: python-pymol
- 16 依赖
- 4 提供
- normalized package name match
- 匹配方式：Pymol
MacPorts95%
pymol
sudo port install pymol- normalized package name match
- 匹配方式：Pymol
winget95%
Schrodinger.PyMOL
winget install --id Schrodinger.PyMOL -e- normalized package name match
- 匹配方式：Pymol
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- cross-ecosystem install command graph
- curated configuration and credential file locations
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment
- pkg.so package database
- pkgdb category and tag curation