Generated source
This hub uses the same local package data as individual package pages: Nucleus package metadata, Homebrew enrichment, Geiger classifier output, secret-handling manifests, and approval-gate seeds where available.
topical
Scientific computing packages
Math, statistics, biology, chemistry, geospatial, and scientific computing packages.
summary
Why this package group is here
Scientific computing packages currently includes 358 package catalog entries. 0 have protected-tool coverage, 0 have approval-gate metadata, and 50 have non-low Geiger classifier findings. The grouping comes from package metadata, so it can stay current as that metadata changes.
Review model
Use the hub to find command families that need tighter secret injection, approval gates, or manual review before agents run them.
High-signal tools
juliageneralized runtime or code generation signalnumbatgeneralized runtime or code generation signalchapelbroad file, network, media, or database tool signalopenfstbroad file, network, media, or database tool signalacl2generalized runtime or code generation signalevageneralized runtime or code generation signalflexiblasgeneralized runtime or code generation signalottgeneralized runtime or code generation signalz3narrow executable package without higher-risk signalsnumpyPackage for scientific computing with Pythonhdf5narrow executable package without higher-risk signalsgtslibrary-like package without higher-risk signals
Related hubs
Representative package spokes
z3narrow executable package without higher-risk signalsnumpyPackage for scientific computing with Pythonhdf5narrow executable package without higher-risk signalsgtslibrary-like package without higher-risk signalsapache-arrownarrow executable package without higher-risk signalsjupyterlabformula declares a Homebrew serviceprojbroad file, network, media, or database tool signalfftwnarrow executable package without higher-risk signalsliblinearlibrary-like package without higher-risk signalsnetcdfnarrow executable package without higher-risk signalspmixnarrow executable package without higher-risk signalscfitsionarrow executable package without higher-risk signalssuite-sparsenarrow executable package without higher-risk signalsqhullnarrow executable package without higher-risk signalsgeosnarrow executable package without higher-risk signalsvtkToolkit for 3D computer graphics, image processing, and visualization
packages
Indexed package pages
| Package | Manager | Signals | Why it appears here |
|---|---|---|---|
| julia | Homebrew | yellow risk, v1.12.6 | generalized runtime or code generation signal |
| numbat | Homebrew | yellow risk, v1.23.0 | generalized runtime or code generation signal |
| chapel | Homebrew | yellow risk, v2.9.0 | broad file, network, media, or database tool signal |
| openfst | Homebrew | yellow risk, v1.8.4 | broad file, network, media, or database tool signal |
| acl2 | Homebrew | yellow risk, v8.7 | generalized runtime or code generation signal |
| eva | Homebrew | yellow risk, v0.3.1 | generalized runtime or code generation signal |
| flexiblas | Homebrew | yellow risk, v3.5.0 | generalized runtime or code generation signal |
| ott | Homebrew | yellow risk, v0.34 | generalized runtime or code generation signal |
| z3 | Homebrew | green risk, v4.16.0 | narrow executable package without higher-risk signals |
| numpy | Homebrew | v2.5.1 | no executable entrypoint in the package index |
| hdf5 | Homebrew | green risk, v2.2.0 | narrow executable package without higher-risk signals |
| gts | Homebrew | green risk, v0.7.6 | library-like package without higher-risk signals |
| apache-arrow | Homebrew | green risk, v25.0.0 | narrow executable package without higher-risk signals |
| fftw | Homebrew | green risk, v3.3.11 | narrow executable package without higher-risk signals |
| liblinear | Homebrew | green risk, v2.50 | library-like package without higher-risk signals |
| netcdf | Homebrew | green risk, v4.10.1 | narrow executable package without higher-risk signals |
| pmix | Homebrew | green risk, v6.1.0 | narrow executable package without higher-risk signals |
| cfitsio | Homebrew | green risk, v4.6.4 | narrow executable package without higher-risk signals |
| suite-sparse | Homebrew | green risk, v7.12.3 | narrow executable package without higher-risk signals |
| qhull | Homebrew | green risk, v2020.2 | narrow executable package without higher-risk signals |
| geos | Homebrew | green risk, v3.14.1 | narrow executable package without higher-risk signals |
| vtk | Homebrew | v9.6.2 | no executable entrypoint in the package index |
| sfcgal | Homebrew | green risk, v2.3.0 | library-like package without higher-risk signals |
| cloc | Homebrew | green risk, v2.10 | narrow executable package without higher-risk signals |
| r | Homebrew | green risk, v4.6.1 | narrow executable package without higher-risk signals |
| gnuplot | Homebrew | green risk, v6.0.5 | narrow executable package without higher-risk signals |
| libdicom | Homebrew | green risk, v1.3.0 | library-like package without higher-risk signals |
| ipopt | Homebrew | green risk, v3.14.19 | narrow executable package without higher-risk signals |
| metis | Homebrew | green risk, v5.1.0 | narrow executable package without higher-risk signals |
| octave | Homebrew | green risk, v11.3.0 | narrow executable package without higher-risk signals |
| cmatrix | Homebrew | green risk, v2.0 | narrow executable package without higher-risk signals |
| hyperfine | Homebrew | green risk, v1.20.0 | narrow executable package without higher-risk signals |
| flann | Homebrew | green risk, v1.9.2 | library-like package without higher-risk signals |
| gsl | Homebrew | green risk, v2.8 | library-like package without higher-risk signals |
| octomap | Homebrew | green risk, v1.10.0 | narrow executable package without higher-risk signals |
| ode | Homebrew | green risk, v0.16.6 | narrow executable package without higher-risk signals |
| colmap | Homebrew | v4.1.1 | no executable entrypoint in the package index |
| root | Homebrew | v6.40.02 | no executable entrypoint in the package index |
| gnuradio | Homebrew | green risk, v3.10.12.0 | narrow executable package without higher-risk signals |
| dvc | Homebrew | v3.67.1 | no executable entrypoint in the package index |
| maxima | Homebrew | green risk, v5.49.0 | narrow executable package without higher-risk signals |
| icarus-verilog | Homebrew | green risk, v13.0 | narrow executable package without higher-risk signals |
| glpk | Homebrew | green risk, v5.0 | library-like package without higher-risk signals |
| samtools | Homebrew | green risk, v1.24 | narrow executable package without higher-risk signals |
| htslib | Homebrew | green risk, v1.24 | library-like package without higher-risk signals |
| librtlsdr | Homebrew | green risk, v2.0.2 | library-like package without higher-risk signals |
| onefetch | Homebrew | green risk, v2.27.1 | narrow executable package without higher-risk signals |
| xrootd | Homebrew | v6.1.0 | no executable entrypoint in the package index |
| scip | Homebrew | green risk, v10.0.3 | narrow executable package without higher-risk signals |
| libqalculate | Homebrew | green risk, v5.12.0 | library-like package without higher-risk signals |
| cbc | Homebrew | green risk, v2.10.13 | narrow executable package without higher-risk signals |
| hdf5-mpi | Homebrew | green risk, v2.2.0 | narrow executable package without higher-risk signals |
| opencascade | Homebrew | green risk, v7.9.3 | narrow executable package without higher-risk signals |
| git-quick-stats | Homebrew | green risk, v2.11.0 | narrow executable package without higher-risk signals |
| calc | Homebrew | v2.17.0.0 | no executable entrypoint in the package index |
| clp | Homebrew | green risk, v1.17.11 | narrow executable package without higher-risk signals |
| pymol | Homebrew | green risk, v3.1.0 | narrow executable package without higher-risk signals |
| volk | Homebrew | green risk, v3.3.0 | library-like package without higher-risk signals |
| wxmaxima | Homebrew | green risk, v26.07.1 | narrow executable package without higher-risk signals |
| bcftools | Homebrew | green risk, v1.24 | narrow executable package without higher-risk signals |
| ngspice | Homebrew | green risk, v46 | narrow executable package without higher-risk signals |
| open-babel | Homebrew | green risk, v3.2.1 | narrow executable package without higher-risk signals |
| netcdf-fortran | Homebrew | green risk, v4.6.4 | narrow executable package without higher-risk signals |
| or-tools | Homebrew | green risk, v9.15 | narrow executable package without higher-risk signals |
| lammps | Homebrew | green risk, v20250722-update4 | narrow executable package without higher-risk signals |
| wcslib | Homebrew | v8.9 | no executable entrypoint in the package index |
| gmt | Homebrew | v6.7.0 | no executable entrypoint in the package index |
| dcmtk | Homebrew | green risk, v3.7.0 | narrow executable package without higher-risk signals |
| gromacs | Homebrew | green risk, v2026.3 | narrow executable package without higher-risk signals |
| seqkit | Homebrew | green risk, v2.13.0 | narrow executable package without higher-risk signals |
| gmsh | Homebrew | green risk, v4.15.2 | narrow executable package without higher-risk signals |
| inchi | Homebrew | green risk, v1.07.5 | narrow executable package without higher-risk signals |