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brew / rank 7367

Install proteinortho with Homebrew, apt

Detecting orthologous genes within different species. Version 6.3.6 via Homebrew; verified 2026-06-25. Also installable with debian: sudo apt install proteinortho.

Install commandSecurity notes

install

Additional install commands

macOS

Homebrewverified · 100%
brew install proteinortho

local Homebrew formula metadata

Linux

Debian aptverified · 92%
sudo apt install proteinortho

Debian stable package indexes · proteinortho · source: deb.debian.org

overview

Package summary

Detecting orthologous genes within different species

Commands and aliases

  • proteinortho
  • proteinortho2html.pl
  • proteinortho2tree.pl
  • proteinortho2xml.pl
  • proteinortho6.pl
  • proteinortho_cleanupblastgraph
  • proteinortho_clustering
  • proteinortho_compareProteinorthoGraphs.pl
  • proteinortho_do_mcl.pl
  • proteinortho_extract_from_graph.pl
  • proteinortho_ffadj_mcs.py
  • proteinortho_formatUsearch.pl
  • proteinortho_grab_proteins.pl
  • proteinortho_graphMinusRemovegraph
  • proteinortho_history.pl
  • proteinortho_singletons.pl
  • proteinortho_summary.pl

security posture

Risk level: orange

infrastructure mutation or orchestration signal.

Risk classifier

orange risk · medium confidence · infrastructure

Why

  • infrastructure mutation or orchestration signal

Signals

  • text:cluster

Install behavior

  • No Homebrew bottle metadata was recorded.

Recommended review

Before unattended agent use, check whether the tool reads plaintext credentials, writes remote state, publishes artifacts, or shells out to plugins.

executables

Installed executables

CommandKindExposureNote
proteinorthoexecutableindexed executableDiscovered from the local executable index.
proteinortho2html.plexecutableindexed executableDiscovered from the local executable index.
proteinortho2tree.plexecutableindexed executableDiscovered from the local executable index.
proteinortho2xml.plexecutableindexed executableDiscovered from the local executable index.
proteinortho6.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_cleanupblastgraphexecutableindexed executableDiscovered from the local executable index.
proteinortho_clusteringexecutableindexed executableDiscovered from the local executable index.
proteinortho_compareProteinorthoGraphs.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_do_mcl.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_extract_from_graph.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_ffadj_mcs.pyexecutableindexed executableDiscovered from the local executable index.
proteinortho_formatUsearch.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_grab_proteins.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_graphMinusRemovegraphexecutableindexed executableDiscovered from the local executable index.
proteinortho_history.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_singletons.plexecutableindexed executableDiscovered from the local executable index.
proteinortho_summary.plexecutableindexed executableDiscovered from the local executable index.

freshness

Version and freshness

These signals separate page generation age, package-manager activity, and upstream release comparison. Version lag is warned only when an evidence URL and comparable versions are present.

page generated2026-08-03
manager version6.3.6
manager updated2026-06-25
local dataunknown
upstreamnot available
latest detectednot detected
  • okNo freshness warnings were generated.

install metadata

Package metadata

Package keybrew:proteinortho
Version6.3.6
Package managerHomebrew
Homepagehttps://gitlab.com/paulklemm_PHD/proteinortho
Last updated2026-06-25T13:38:03+02:00
Pulseupdated
Bottlenot recorded
Servicenone declared

source database matches

Other package-manager records

Matches are pulled from external package-manager indexes and kept separate from local Automic Vault package links.

Debian apt95%

proteinortho 6.3.1+dfsg-1

Detection of (Co-)orthologs in large-scale protein analysis

https://gitlab.com/paulklemm_PHD/proteinortho

sudo apt install proteinortho
  • Section: science
  • Architecture: amd64
  • 10 dependencies
  • normalized package name match
  • Matched by: Proteinortho
Debian stable package indexes · deb.debian.org · Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Ubuntu apt95%

proteinortho 6.3.1+dfsg-1

Detection of (Co-)orthologs in large-scale protein analysis

https://gitlab.com/paulklemm_PHD/proteinortho

sudo apt install proteinortho
  • Section: universe/science
  • Architecture: amd64
  • 10 dependencies
  • normalized package name match
  • Matched by: Proteinortho
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: proteinortho from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz

package graph

Links come from deterministic package relationships, av.db category and tag curation, ecosystem matches, and package hub membership.

source trail

Generated from repository data

This page is generated by av-web from the private package SQLite artifact built by scripts/generate-pkg-sqlite.py.

Used sources

  • Geiger risk classifier
  • cross-ecosystem install command graph
  • external package-manager database matches
  • pkg.so package database
  • pkgdb category and tag curation