macOS
Homebrewvérifié · 100%
brew install picard-toolslocal Homebrew formula metadata
brew / rang 6622
Installer picard-tools avec Homebrew, apt, Nix, apk, chocolatey, dnf, pacman, zypper, scoop, winget
Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de picard-tools pour les workflows d'agents IA.
installation
Commandes d'installation supplémentaires
Linux
Debian aptvérifié · 92%
sudo apt install picard-toolsDebian stable package indexes · picard-tools · Source: deb.debian.org
Nixvérifié · 92%
nix profile install nixpkgs#picard-toolsnixpkgs package indexes · pkgs/by-name/pi/picard-tools/package.nix · Source: api.github.com
Alpine Linux apkvérifié · 92%
sudo apk add picardAlpine Linux edge package indexes · picard · Source: dl-cdn.alpinelinux.org
Fedora dnfvérifié · 92%
sudo dnf install picardFedora Rawhide package metadata · picard · Source: dl.fedoraproject.org
Arch Linux pacmanvérifié · 92%
sudo pacman -S picardArch Linux sync databases · picard · Source: geo.mirror.pkgbuild.com
openSUSE zyppervérifié · 92%
sudo zypper install picardopenSUSE Tumbleweed package metadata · picard · Source: download.opensuse.org
Windows
Chocolateyvérifié · 92%
choco install picardChocolatey community package catalog · picard · Source: community.chocolatey.org
Scoopvérifié · 92%
scoop install extras/picardScoop official bucket manifest trees · bucket/picard.json · Source: api.github.com
Windows Package Managervérifié · 92%
winget install --id MusicBrainz.Picard -eWindows Package Manager source index · MusicBrainz.Picard · Source: cdn.winget.microsoft.com
aperçu
Résumé du paquet
Tools for manipulating HTS data and formats
Liens du projet
Commandes et alias
- picard
historique
Historique du projet et usages
Picard Tools is the Broad Institute's Java command-line toolkit for manipulating, validating, converting, and collecting metrics from high-throughput sequencing data.
Historique du projet
Picard Tools is the Broad Institute's Java toolkit for manipulating high-throughput sequencing formats including SAM, BAM, CRAM, and VCF. The current public repository was established in 2014, while the toolkit belongs to the older Broad sequencing-analysis ecosystem.
Picard is implemented on HTSJDK, the Java library for accessing common sequencing formats. Its tools later became closely integrated with GATK; GATK 4 describes its mission as bringing together established GATK and Picard tools under a streamlined framework.
Historique d'adoption
Picard became a standard component of next-generation sequencing preprocessing because it groups many format-aware operations into one toolkit: read-group editing, sorting, conversion, duplicate marking, validation, interval handling, and sequencing QC metrics.
The Broad Institute's GATK 4 project explicitly brings together established tools from the GATK and Picard codebases. Picard is also broadly distributed through scientific and general-purpose package ecosystems, making its command semantics common in reproducible genomics pipelines.
Modes d'utilisation
Practitioners invoke individual tools through the Picard jar or a package-manager-provided picard wrapper. Common pipeline steps include adding read groups, sorting alignments, marking duplicates, validating SAM/BAM files, converting formats, manipulating interval lists, and producing library or sequencing metrics.
Picard is most often scripted between alignment and variant analysis. It has no general per-user configuration or credential file; behavior is supplied through command options, JVM arguments, input data, references, and environment-specific cloud authentication when applicable.
Pourquoi les passionnés de paquets s'y intéressent
Picard is package-nerd significant because it combines a large family of narrowly scoped scientific commands in one Java artifact. Pipeline maintainers care about its Java runtime, HTSJDK compatibility, strict format validation, reference and index assumptions, metrics outputs, and behavior changes that can affect reproducibility.
Its best-known command, MarkDuplicates, made Picard a standard reference point for duplicate-marking implementations. The package often sits between an aligner and downstream variant calling, where metadata and file-format correctness are part of the scientific record.
Chronologie
- 2014: The current broadinstitute/picard public repository was established.
- 2019: The official repository documented Picard Toolkit as its recommended software citation.
- GATK 4 era: Established Picard tools were incorporated into the unified GATK framework.
- 2020s: Picard continued evolving with HTSJDK, Java, BAM, CRAM, and cloud-I/O changes.
Related projects
- HTSJDK supplies Picard's Java format-access layer.
- GATK incorporates established Picard tools into a broader variant-discovery toolkit.
- The hts-specs project defines the SAM, BAM, CRAM, and VCF formats that Picard processes.
Sources
posture de sécurité
Niveau de risque : vert
narrow executable package without higher-risk signals.
Classificateur de risque
risque vert · confiance faible · appliance
Pourquoi
- narrow executable package without higher-risk signals
Signaux
- metadata:no-higher-risk-signals
Comportement d'installation
- Aucun hook post-install Homebrew n’est enregistré dans les métadonnées de formule.
- Les métadonnées de bottle Homebrew sont disponibles pour 1 plateformes.
- S’installe avec 1 dépendances d’exécution.
Revue recommandée
Avant une utilisation sans surveillance par un agent, vérifiez si l'outil lit des identifiants en clair, écrit un état distant, publie des artefacts ou lance des plugins.
exécutables
Exécutables installés
| Commande | Type | Exposition | Note |
|---|---|---|---|
picard | cli | exécutable global |
fraîcheur
Version et fraîcheur
Ces signaux séparent l'âge de génération de la page, l'activité du gestionnaire de paquets et la comparaison avec les versions amont. Un retard de version n'est signalé que lorsqu'une URL de preuve et des versions comparables sont présentes.
page générée2026-11-04
version du gestionnaire3.5.0
gestionnaire mis à jour2026-07-31
données localesOK
amontnot checked
dernière version détectéenon détecté
https://github.com/broadinstitute/picard
- infoNo cached GitHub release or tag data was available.https://github.com/broadinstitute/picardconfiance none
métadonnées d'installation
Métadonnées du paquet
| Clé du paquet | brew:picard-tools |
|---|---|
| Version | 3.5.0 |
| Gestionnaire de paquets | Homebrew |
| Page du gestionnaire de paquets | https://formulae.brew.sh/formula/picard-tools |
| Page d'accueil | https://broadinstitute.github.io/picard/ |
| Dépôt | https://github.com/broadinstitute/picard |
| Docs amont | https://broadinstitute.github.io/picard/ |
| Licence | MIT |
| Archive source | https://github.com/broadinstitute/picard/releases/download/3.5.0/picard.jar |
| Dernière mise à jour | 2026-07-31T21:30:01Z |
| Pulse | updated |
| Dépendances | openjdk |
| Bouteille | disponible (sur all) |
| post-install Homebrew | non défini |
| Service | aucun déclaré |
faits du registre
Détails de la base source
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | picard-tools |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
correspondances dans les bases sources
Autres enregistrements de gestionnaires de paquets
Les correspondances proviennent d’index externes de gestionnaires de paquets et restent séparées des liens de paquets Automic Vault locaux.
Debian apt95%
libpicard-java 3.3.0+dfsg-2
Java library to manipulate SAM and BAM files
https://broadinstitute.github.io/picard/
sudo apt install libpicard-java- Section: java
- Architecture: all
- Source Package: picard-tools
- 6 Dépendances
- 2 dépendances optionnelles
- normalized package name match
- Correspondance par : Picard Tools
Debian apt95%
libpicard-java-doc 3.3.0+dfsg-2
Documentation for the java picard library
https://broadinstitute.github.io/picard/
sudo apt install libpicard-java-doc- Section: doc
- Architecture: all
- Source Package: picard-tools
- 1 Dépendances
- normalized package name match
- Correspondance par : Picard Tools
Debian apt95%
picard-tools 3.3.0+dfsg-2
Command line tools to manipulate SAM and BAM files
https://broadinstitute.github.io/picard/
sudo apt install picard-tools- Section: science
- Architecture: all
- 3 Dépendances
- normalized package name match
- Correspondance par : Picard Tools
Nix95%
picard-tools
nix profile install nixpkgs#picard-tools- normalized package name match
- Correspondance par : Picard Tools
Ubuntu apt95%
libpicard-java 3.1.1+dfsg-1
Java library to manipulate SAM and BAM files
https://broadinstitute.github.io/picard/
sudo apt install libpicard-java- Section: universe/java
- Architecture: all
- Source Package: picard-tools
- 6 Dépendances
- 2 dépendances optionnelles
- normalized package name match
- Correspondance par : Picard Tools
Ubuntu apt95%
libpicard-java-doc 3.1.1+dfsg-1
Documentation for the java picard library
https://broadinstitute.github.io/picard/
sudo apt install libpicard-java-doc- Section: universe/doc
- Architecture: all
- Source Package: picard-tools
- 1 Dépendances
- normalized package name match
- Correspondance par : Picard Tools
Ubuntu apt95%
picard-tools 3.1.1+dfsg-1
Command line tools to manipulate SAM and BAM files
https://broadinstitute.github.io/picard/
sudo apt install picard-tools- Section: universe/science
- Architecture: all
- 3 Dépendances
- normalized package name match
- Correspondance par : Picard Tools
Debian apt92%
picard 2.13.3-1
Next-Generation MusicBrainz audio files tagger
https://picard.musicbrainz.org/
sudo apt install picard- Section: sound
- Architecture: amd64
- 12 Dépendances
- 3 dépendances optionnelles
- installed executable or alias match
- Correspondance par : Picard
Nix92%
picard
nix profile install nixpkgs#picard- installed executable or alias match
- Correspondance par : Picard
Ubuntu apt92%
picard 2.11-1
Next-Generation MusicBrainz audio files tagger
https://picard.musicbrainz.org/
sudo apt install picard- Section: universe/sound
- Architecture: amd64
- 13 Dépendances
- 3 dépendances optionnelles
- installed executable or alias match
- Correspondance par : Picard
apk92%
picard 2.13.3_git20251006-r2
Official MusicBrainz tagger
https://picard.musicbrainz.org/
sudo apk add picard- License: GPL-2.0-or-later
- Architecture: x86_64
- Source Package: picard
- 1 Dépendances
- 1 fournit
- installed executable or alias match
- Correspondance par : Picard
apk92%
picard-lang 2.13.3_git20251006-r2
Official MusicBrainz tagger
https://picard.musicbrainz.org/
sudo apk add picard-lang- License: GPL-2.0-or-later
- Architecture: x86_64
- Source Package: picard
- 1 Dépendances
- installed executable or alias match
- Correspondance par : Picard
apk92%
picard-pyc 2.13.3_git20251006-r2
Precompiled Python bytecode for picard
https://picard.musicbrainz.org/
sudo apk add picard-pyc- License: GPL-2.0-or-later
- Architecture: x86_64
- Source Package: picard
- 1 Dépendances
- installed executable or alias match
- Correspondance par : Picard
dnf92%
picard 2.13.3-9.fc45
MusicBrainz-based audio tagger
https://github.com/musicbrainz/picard
sudo dnf install picard- License: GPL-2.0-or-later
- Category: Unspecified
- Architecture: x86_64
- Source Package: picard
- 11 Dépendances
- 6 fournit
- installed executable or alias match
- Correspondance par : Picard
pacman92%
picard 2.13.3-3
Official MusicBrainz tagger
https://github.com/metabrainz/picard
sudo pacman -S picard- License: GPL-2.0-or-later
- Architecture: x86_64
- 11 Dépendances
- 3 dépendances optionnelles
- installed executable or alias match
- Correspondance par : Picard
zypper92%
picard 2.13.3-1.7
The Next Generation MusicBrainz Tagger
https://picard.musicbrainz.org
sudo zypper install picard- License: GPL-2.0-or-later
- Category: Productivity/Multimedia/Sound/Utilities
- Architecture: x86_64
- Source Package: picard
- 12 Dépendances
- 6 fournit
- installed executable or alias match
- Correspondance par : Picard
piste source
Généré depuis les données du dépôt
Cette page est servie par av-web depuis l'artéfact SQLite privé des paquets généré par scripts/generate-pkg-sqlite.py.
Combined YAML source
View the package source record on GitHub.
Sources utilisées
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment
- pkg.so package database
- pkgdb category and tag curation