macOS
Homebrewverifiziert · 100%
brew install seqtklocal Homebrew formula metadata
brew / Rang 5171
seqtk mit Homebrew, apt, Nix installieren
Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für seqtk in AI-Agent-Workflows.
Installation
Weitere Installationsbefehle
Linux
Debian aptverifiziert · 92%
sudo apt install seqtkDebian stable package indexes · seqtk · Quelle: deb.debian.org
Nixverifiziert · 92%
nix profile install nixpkgs#seqtknixpkgs package indexes · pkgs/by-name/se/seqtk/package.nix · Quelle: api.github.com
Überblick
Paketzusammenfassung
Toolkit for processing sequences in FASTA/Q formats
Projektlinks
Befehle und Aliase
- seqtk
Verlauf
Projektgeschichte und Nutzung
Seqtk is a lightweight command-line toolkit for common transformations and selections on FASTA and FASTQ biological-sequence files.
Projektgeschichte
Seqtk was created by Heng Li as a fast, lightweight toolkit for manipulating FASTA and FASTQ sequence data. Its implementation and build remain deliberately small, with zlib as its only library dependency.
Adoptionsgeschichte
Seqtk is distributed by multiple Unix package ecosystems, including Homebrew, Debian, Ubuntu, and Nix, making its small command-line toolkit readily available in bioinformatics environments.
Wie es verwendet wird
Typical uses include FASTQ-to-FASTA conversion, reverse complementation, sequence or region extraction, masking, paired-read subsampling, quality trimming, and line normalization. It accepts gzip-compressed input and is commonly placed in shell pipelines.
Warum Paket-Nerds sich dafür interessieren
Seqtk is valued as a compact, zlib-only sequence-processing utility that composes naturally with pipes and established genomics tools. Its focused executable covers many routine FASTA/FASTQ transformations without requiring a larger workflow framework.
Zeitleiste
- 2010s: Seqtk became a commonly packaged Unix command-line utility for lightweight FASTA/FASTQ processing.
Related projects
- Seqtk commonly appears alongside read aligners and other command-line genomics software that consume FASTA, FASTQ, BED, or related formats.
Quellen
- Official repository and README: https://github.com/lh3/seqtk
- source_facts.package-manager
Sicherheitslage
Risikostufe: grün
narrow executable package without higher-risk signals.
Risikoklassifikator
grün Risiko · niedrig Konfidenz · appliance
Warum
- narrow executable package without higher-risk signals
Signale
- metadata:no-higher-risk-signals
Installationsverhalten
- In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
- Homebrew-Bottle-Metadaten sind für 6 Plattformziele verfügbar.
Empfohlene Prüfung
Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.
Executables
Installierte Executables
| Befehl | Art | Sichtbarkeit | Hinweis |
|---|---|---|---|
seqtk | cli | globales Executable |
Aktualität
Version und Aktualität
Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.
Seite generiert2026-09-19
Manager-Version1.5
Manager aktualisiert2026-09-11
lokale DatenOK
Upstreamaktuell
neueste erkannte Versionv1.5
- OKEs wurden keine Aktualitätswarnungen generiert.
Installationsmetadaten
Paketmetadaten
| Paketschlüssel | brew:seqtk |
|---|---|
| Version | 1.5 |
| Paketmanager | Homebrew |
| Paketmanager-Seite | https://formulae.brew.sh/formula/seqtk |
| Homepage | https://github.com/lh3/seqtk |
| Repository | https://github.com/lh3/seqtk |
| Lizenz | MIT |
| Quellarchiv | https://github.com/lh3/seqtk/archive/refs/tags/v1.5.tar.gz |
| Zuletzt aktualisiert | 2026-09-11T16:43:42Z |
| Pulse | updated |
| Bottle | verfügbar (auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | nicht definiert |
| Dienst | keiner deklariert |
Registry-Fakten
Details aus der Quelldatenbank
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | seqtk |
| Version Scheme | 0 |
| Revision | 0 |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
Source-Datenbank-Treffer
Andere Paketmanager-Einträge
Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.
Debian apt95%
seqtk 1.4-2
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sudo apt install seqtk- Section: science
- Architecture: amd64
- 2 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Seqtk
Nix95%
seqtk
nix profile install nixpkgs#seqtk- normalized package name match
- Abgeglichen nach: Seqtk
Ubuntu apt95%
seqtk 1.4-2
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sudo apt install seqtk- Section: universe/science
- Architecture: amd64
- 2 Abhängigkeiten
- normalized package name match
- Abgeglichen nach: Seqtk
Quellspur
Aus Repository-Daten generiert
Diese Seite wird von av-web aus dem privaten Paket-SQLite-Artefakt bereitgestellt, das scripts/generate-pkg-sqlite.py erstellt.
Combined YAML source
View the package source record on GitHub.
Verwendete Quellen
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- package relationship graph
- package version freshness
- package-page enrichment
- pkg.so package database
- pkgdb category and tag curation