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brew / Rang 6622

picard-tools mit Homebrew, apt, Nix, apk, chocolatey, dnf, pacman, zypper, scoop, winget installieren

Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für picard-tools in AI-Agent-Workflows.

InstallationsbefehlSicherheitshinweise

Installation

Weitere Installationsbefehle

macOS

Homebrewverifiziert · 100%
brew install picard-tools

local Homebrew formula metadata

Linux

Debian aptverifiziert · 92%
sudo apt install picard-tools

Debian stable package indexes · picard-tools · Quelle: deb.debian.org

Nixverifiziert · 92%
nix profile install nixpkgs#picard-tools

nixpkgs package indexes · pkgs/by-name/pi/picard-tools/package.nix · Quelle: api.github.com

Alpine Linux apkverifiziert · 92%
sudo apk add picard

Alpine Linux edge package indexes · picard · Quelle: dl-cdn.alpinelinux.org

Fedora dnfverifiziert · 92%
sudo dnf install picard

Fedora Rawhide package metadata · picard · Quelle: dl.fedoraproject.org

Arch Linux pacmanverifiziert · 92%
sudo pacman -S picard

Arch Linux sync databases · picard · Quelle: geo.mirror.pkgbuild.com

openSUSE zypperverifiziert · 92%
sudo zypper install picard

openSUSE Tumbleweed package metadata · picard · Quelle: download.opensuse.org

Windows

Chocolateyverifiziert · 92%
choco install picard

Chocolatey community package catalog · picard · Quelle: community.chocolatey.org

Scoopverifiziert · 92%
scoop install extras/picard

Scoop official bucket manifest trees · bucket/picard.json · Quelle: api.github.com

Windows Package Managerverifiziert · 92%
winget install --id MusicBrainz.Picard -e

Windows Package Manager source index · MusicBrainz.Picard · Quelle: cdn.winget.microsoft.com

Überblick

Paketzusammenfassung

Tools for manipulating HTS data and formats

Befehle und Aliase

  • picard

Verlauf

Projektgeschichte und Nutzung

Picard Tools is the Broad Institute's Java command-line toolkit for manipulating, validating, converting, and collecting metrics from high-throughput sequencing data.

Projektgeschichte

Picard Tools is the Broad Institute's Java toolkit for manipulating high-throughput sequencing formats including SAM, BAM, CRAM, and VCF. The current public repository was established in 2014, while the toolkit belongs to the older Broad sequencing-analysis ecosystem.

Picard is implemented on HTSJDK, the Java library for accessing common sequencing formats. Its tools later became closely integrated with GATK; GATK 4 describes its mission as bringing together established GATK and Picard tools under a streamlined framework.

Adoptionsgeschichte

Picard became a standard component of next-generation sequencing preprocessing because it groups many format-aware operations into one toolkit: read-group editing, sorting, conversion, duplicate marking, validation, interval handling, and sequencing QC metrics.

The Broad Institute's GATK 4 project explicitly brings together established tools from the GATK and Picard codebases. Picard is also broadly distributed through scientific and general-purpose package ecosystems, making its command semantics common in reproducible genomics pipelines.

Wie es verwendet wird

Practitioners invoke individual tools through the Picard jar or a package-manager-provided picard wrapper. Common pipeline steps include adding read groups, sorting alignments, marking duplicates, validating SAM/BAM files, converting formats, manipulating interval lists, and producing library or sequencing metrics.

Picard is most often scripted between alignment and variant analysis. It has no general per-user configuration or credential file; behavior is supplied through command options, JVM arguments, input data, references, and environment-specific cloud authentication when applicable.

Warum Paket-Nerds sich dafür interessieren

Picard is package-nerd significant because it combines a large family of narrowly scoped scientific commands in one Java artifact. Pipeline maintainers care about its Java runtime, HTSJDK compatibility, strict format validation, reference and index assumptions, metrics outputs, and behavior changes that can affect reproducibility.

Its best-known command, MarkDuplicates, made Picard a standard reference point for duplicate-marking implementations. The package often sits between an aligner and downstream variant calling, where metadata and file-format correctness are part of the scientific record.

Zeitleiste

  • 2014: The current broadinstitute/picard public repository was established.
  • 2019: The official repository documented Picard Toolkit as its recommended software citation.
  • GATK 4 era: Established Picard tools were incorporated into the unified GATK framework.
  • 2020s: Picard continued evolving with HTSJDK, Java, BAM, CRAM, and cloud-I/O changes.

Related projects

  • HTSJDK supplies Picard's Java format-access layer.
  • GATK incorporates established Picard tools into a broader variant-discovery toolkit.
  • The hts-specs project defines the SAM, BAM, CRAM, and VCF formats that Picard processes.

Sicherheitslage

Risikostufe: grün

narrow executable package without higher-risk signals.

Risikoklassifikator

grün Risiko · niedrig Konfidenz · appliance

Warum

  • narrow executable package without higher-risk signals

Signale

  • metadata:no-higher-risk-signals

Installationsverhalten

  • In den Formelmetadaten ist kein Homebrew-Post-install-Hook erfasst.
  • Homebrew-Bottle-Metadaten sind für 1 Plattformziele verfügbar.
  • Installiert mit 1 Laufzeitabhängigkeiten.

Empfohlene Prüfung

Prüfe vor unbeaufsichtigter Agent-Nutzung, ob das Tool Klartext-Credentials liest, Remote-Zustand schreibt, Artefakte veröffentlicht oder Plugins ausführt.

Executables

Installierte Executables

BefehlArtSichtbarkeitHinweis
picardcliglobales Executable

Aktualität

Version und Aktualität

Diese Signale trennen das Alter der Seitengenerierung, Aktivität des Paketmanagers und Upstream-Release-Vergleich. Versionsrückstand wird nur gemeldet, wenn eine Evidenz-URL und vergleichbare Versionen vorhanden sind.

Seite generiert2026-11-04
Manager-Version3.5.0
Manager aktualisiert2026-07-31
lokale DatenOK
Upstreamnot checked
neueste erkannte Versionnicht erkannt

https://github.com/broadinstitute/picard

Installationsmetadaten

Paketmetadaten

Paketschlüsselbrew:picard-tools
Version3.5.0
PaketmanagerHomebrew
Paketmanager-Seitehttps://formulae.brew.sh/formula/picard-tools
Homepagehttps://broadinstitute.github.io/picard/
Repositoryhttps://github.com/broadinstitute/picard
Upstream-Dokumentationhttps://broadinstitute.github.io/picard/
LizenzMIT
Quellarchivhttps://github.com/broadinstitute/picard/releases/download/3.5.0/picard.jar
Zuletzt aktualisiert2026-07-31T21:30:01Z
Pulseupdated
Abhängigkeitenopenjdk
Bottleverfügbar (auf all)
Homebrew post-installnicht definiert
Dienstkeiner deklariert

Registry-Fakten

Details aus der Quelldatenbank

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Namepicard-tools
Version Scheme0
Revision0
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • stable

Source-Datenbank-Treffer

Andere Paketmanager-Einträge

Treffer stammen aus externen Paketmanager-Indizes und bleiben von lokalen Automic-Vault-Paketlinks getrennt.

Debian apt95%

libpicard-java 3.3.0+dfsg-2

Java library to manipulate SAM and BAM files

https://broadinstitute.github.io/picard/

sudo apt install libpicard-java
  • Section: java
  • Architecture: all
  • Source Package: picard-tools
  • 6 Abhängigkeiten
  • 2 optionale Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Picard Tools
Debian stable package indexes · deb.debian.org · Debian stable package indexes: libpicard-java from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

libpicard-java-doc 3.3.0+dfsg-2

Documentation for the java picard library

https://broadinstitute.github.io/picard/

sudo apt install libpicard-java-doc
  • Section: doc
  • Architecture: all
  • Source Package: picard-tools
  • 1 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Picard Tools
Debian stable package indexes · deb.debian.org · Debian stable package indexes: libpicard-java-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

picard-tools 3.3.0+dfsg-2

Command line tools to manipulate SAM and BAM files

https://broadinstitute.github.io/picard/

sudo apt install picard-tools
  • Section: science
  • Architecture: all
  • 3 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Picard Tools
Debian stable package indexes · deb.debian.org · Debian stable package indexes: picard-tools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

picard-tools

nix profile install nixpkgs#picard-tools
  • normalized package name match
  • Abgeglichen nach: Picard Tools
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/pi/picard-tools/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

libpicard-java 3.1.1+dfsg-1

Java library to manipulate SAM and BAM files

https://broadinstitute.github.io/picard/

sudo apt install libpicard-java
  • Section: universe/java
  • Architecture: all
  • Source Package: picard-tools
  • 6 Abhängigkeiten
  • 2 optionale Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Picard Tools
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: libpicard-java from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

libpicard-java-doc 3.1.1+dfsg-1

Documentation for the java picard library

https://broadinstitute.github.io/picard/

sudo apt install libpicard-java-doc
  • Section: universe/doc
  • Architecture: all
  • Source Package: picard-tools
  • 1 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Picard Tools
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: libpicard-java-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

picard-tools 3.1.1+dfsg-1

Command line tools to manipulate SAM and BAM files

https://broadinstitute.github.io/picard/

sudo apt install picard-tools
  • Section: universe/science
  • Architecture: all
  • 3 Abhängigkeiten
  • normalized package name match
  • Abgeglichen nach: Picard Tools
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: picard-tools from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Debian apt92%

picard 2.13.3-1

Next-Generation MusicBrainz audio files tagger

https://picard.musicbrainz.org/

sudo apt install picard
  • Section: sound
  • Architecture: amd64
  • 12 Abhängigkeiten
  • 3 optionale Abhängigkeiten
  • installed executable or alias match
  • Abgeglichen nach: Picard
Debian stable package indexes · deb.debian.org · Debian stable package indexes: picard from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix92%

picard

nix profile install nixpkgs#picard
  • installed executable or alias match
  • Abgeglichen nach: Picard
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/pi/picard/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt92%

picard 2.11-1

Next-Generation MusicBrainz audio files tagger

https://picard.musicbrainz.org/

sudo apt install picard
  • Section: universe/sound
  • Architecture: amd64
  • 13 Abhängigkeiten
  • 3 optionale Abhängigkeiten
  • installed executable or alias match
  • Abgeglichen nach: Picard
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: picard from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
apk92%

picard 2.13.3_git20251006-r2

Official MusicBrainz tagger

https://picard.musicbrainz.org/

sudo apk add picard
  • License: GPL-2.0-or-later
  • Architecture: x86_64
  • Source Package: picard
  • 1 Abhängigkeiten
  • 1 stellt bereit
  • installed executable or alias match
  • Abgeglichen nach: Picard
Alpine Linux edge package indexes · dl-cdn.alpinelinux.org · Alpine Linux edge package indexes: picard from https://dl-cdn.alpinelinux.org/alpine/edge/community/x86_64/APKINDEX.tar.gz
apk92%

picard-lang 2.13.3_git20251006-r2

Official MusicBrainz tagger

https://picard.musicbrainz.org/

sudo apk add picard-lang
  • License: GPL-2.0-or-later
  • Architecture: x86_64
  • Source Package: picard
  • 1 Abhängigkeiten
  • installed executable or alias match
  • Abgeglichen nach: Picard
Alpine Linux edge package indexes · dl-cdn.alpinelinux.org · Alpine Linux edge package indexes: picard-lang from https://dl-cdn.alpinelinux.org/alpine/edge/community/x86_64/APKINDEX.tar.gz
apk92%

picard-pyc 2.13.3_git20251006-r2

Precompiled Python bytecode for picard

https://picard.musicbrainz.org/

sudo apk add picard-pyc
  • License: GPL-2.0-or-later
  • Architecture: x86_64
  • Source Package: picard
  • 1 Abhängigkeiten
  • installed executable or alias match
  • Abgeglichen nach: Picard
Alpine Linux edge package indexes · dl-cdn.alpinelinux.org · Alpine Linux edge package indexes: picard-pyc from https://dl-cdn.alpinelinux.org/alpine/edge/community/x86_64/APKINDEX.tar.gz
dnf92%

picard 2.13.3-9.fc45

MusicBrainz-based audio tagger

https://github.com/musicbrainz/picard

sudo dnf install picard
  • License: GPL-2.0-or-later
  • Category: Unspecified
  • Architecture: x86_64
  • Source Package: picard
  • 11 Abhängigkeiten
  • 6 stellt bereit
  • installed executable or alias match
  • Abgeglichen nach: Picard
Fedora Rawhide package metadata · dl.fedoraproject.org · Fedora Rawhide package metadata: picard from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/652278618dec9c023176a80c435a32a2c8154869fb0eb662c267a54df28d77d9-primary.xml.zst
pacman92%

picard 2.13.3-3

Official MusicBrainz tagger

https://github.com/metabrainz/picard

sudo pacman -S picard
  • License: GPL-2.0-or-later
  • Architecture: x86_64
  • 11 Abhängigkeiten
  • 3 optionale Abhängigkeiten
  • installed executable or alias match
  • Abgeglichen nach: Picard
Arch Linux sync databases · geo.mirror.pkgbuild.com · Arch Linux sync databases: picard from https://geo.mirror.pkgbuild.com/extra/os/x86_64/extra.db.tar.gz
zypper92%

picard 2.13.3-1.7

The Next Generation MusicBrainz Tagger

https://picard.musicbrainz.org

sudo zypper install picard
  • License: GPL-2.0-or-later
  • Category: Productivity/Multimedia/Sound/Utilities
  • Architecture: x86_64
  • Source Package: picard
  • 12 Abhängigkeiten
  • 6 stellt bereit
  • installed executable or alias match
  • Abgeglichen nach: Picard
openSUSE Tumbleweed package metadata · download.opensuse.org · openSUSE Tumbleweed package metadata: picard from https://download.opensuse.org/tumbleweed/repo/oss/repodata/d310d5a96106e1e8872a385adf98aaa23be9db5d80937a6717314e7e7f37715065c6c748ab7ccee6475d620b46979c0fe64235fc0c46988e17edf659578fcf31-primary.xml.zst

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