使用 Homebrew 安装 nanoq

项目链接

• 主页

命令和别名

• nanoq

项目历史

The public repository and first tagged releases appeared in March 2020. The project subsequently expanded its filters, reports, compression support, and machine-readable output, reaching the 0.8 series in 2021, 0.9.0 in 2022, and 0.10.0 in 2023. Steinig and Coin described Nanoq in the Journal of Open Source Software in 2022.

采用历史

Nanoq is distributed through Cargo, Conda/Bioconda, precompiled Linux and macOS release archives, and a Homebrew formula. Its official benchmarks position it alongside established sequencing utilities including NanoFilt, NanoStat, Filtlong, seqtk, SeqKit, and rust-bio-tools.

使用方式

Users pass FASTA or FASTQ reads by file or standard input, apply length or quality filters and optional end trimming, and send surviving reads to a file or standard output. Statistics can be emitted as compact text, verbose summaries, or JSON; a fast mode skips quality-score calculation for greater throughput.

为什么软件包爱好者会关心

Nanoq is notable as a small, single-purpose Rust CLI that composes naturally in Unix pipelines while being packaged across the Rust, bioinformatics, binary-release, and Homebrew ecosystems. Its benchmarked trade-off between full quality calculations and an exceptionally fast quality-free mode makes it useful when choosing lightweight tools for large sequencing streams.

时间线

• 2020: First public tagged releases.
• 2021: The 0.8 release series broadened the mature CLI.
• 2022: Nanoq was published in the Journal of Open Source Software and version 0.9.0 was released.
• 2023: Version 0.10.0 was released.

Related projects

• NanoFilt and NanoStat provide nanopore filtering and statistics workflows used as official benchmark comparisons.
• Filtlong, seqtk, SeqKit, and rust-bio-tools are neighboring read-processing tools compared in Nanoq's official benchmarks.
• Needletail and niffler provide Nanoq's read-processing and compression foundations.

来源

• https://github.com/esteinig/nanoq
• https://github.com/esteinig/nanoq/releases
• https://joss.theoj.org/papers/10.21105/joss.02991
• source_facts.package-manager.brew