macOS
Homebrew已验证 · 100%
brew install miniprotlocal Homebrew formula metadata
安装
其他安装命令
概览
软件包摘要
Align proteins to genomes with splicing and frameshift
历史
项目历史与用法
miniprot is Heng Li's protein-to-genome aligner for genome annotation. The preprint appeared in 2022 and the Bioinformatics paper was published in 2023, describing miniprot as a new aligner for mapping protein sequences to complete genomes with k-mer sketching and vectorized dynamic programming.
项目历史
The program fills a bioinformatics gap between older tools such as GeneWise and Exonerate and the scale of modern genome projects. Its README says it aligns protein sequences against genomes with affine gap penalties, splicing, and frameshifts, primarily to annotate protein-coding genes in a new species using known genes from other species. It can build a genome index, output protein PAF, emit GFF3 with embedded PAF, and optionally use splice scores from minisplice.
使用方式
Adoption is source-backed through bioinformatics workflows rather than general-purpose package popularity. BUSCO's user guide lists miniprot among third-party tools to cite, and the GALBA genome-annotation pipeline paper describes genome annotation with miniprot and AUGUSTUS. Homebrew packages it as a single `miniprot` executable for the scientific-command-line niche, alongside Bioconda-style distribution and upstream source builds.
来源
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- 未记录 Homebrew bottle 元数据。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
miniprot | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-08-03
管理器版本0.18
管理器更新时间
本地数据未知
上游不可用
检测到的最新版本未检测到
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:miniprot |
|---|---|
| 版本 | 0.18 |
| 软件包管理器 | Homebrew |
| 主页 | https://lh3.github.io/miniprot/ |
| 仓库 | https://github.com/lh3/miniprot |
| Bottle | 未记录 |
| 服务 | 未声明 |
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- pkg.so package database
- pkgdb category and tag curation