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使用 Homebrew, apt, Nix, scoop 安装 igv

查看 igv 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

安装命令安全说明

安装

其他安装命令

macOS

Homebrew已验证 · 100%
brew install igv

local Homebrew formula metadata

Linux

Debian apt已验证 · 92%
sudo apt install igv

Debian stable package indexes · igv · 来源: deb.debian.org

Nix已验证 · 92%
nix profile install nixpkgs#igv

nixpkgs package indexes · pkgs/by-name/ig/igv/package.nix · 来源: api.github.com

Windows

Scoop已验证 · 92%
scoop install extras/igv

Scoop official bucket manifest trees · bucket/igv.json · 来源: api.github.com

概览

软件包摘要

Interactive Genomics Viewer

命令和别名

  • igv
  • igvtools

历史

项目历史与用法

The Integrative Genomics Viewer is a desktop genome visualization tool for interactively exploring large genomic datasets, annotations, alignments, and metadata across local, public, and cloud-hosted sources.

项目历史

IGV originated at the Broad Institute as a response to the growing size and heterogeneity of genomic datasets. The 2011 Nature Biotechnology paper introduced IGV as a tool for integrated visual exploration, and the 2013 Briefings in Bioinformatics paper described it as a high-performance viewer for large heterogeneous genomics data.

The desktop application later became one member of a broader IGV family. The official desktop docs list the original Java desktop application, IGV-Web, and igv.js as related forms, while the GitHub README identifies the desktop repository as the Mac, Windows, and Linux application.

采用历史

IGV's adoption is unusually strong for a desktop scientific package because it became both a research citation target and a practical review tool. The docs explicitly tell researchers how to cite IGV, and the project site lists follow-on publications including variant review and igv.js.

使用方式

Desktop IGV is used to load genome references and inspect aligned reads, variants, annotations, expression data, and other genomics tracks. The Homebrew package exposes both `igv` and `igvtools`, reflecting the split between interactive visualization and command-line data preparation.

为什么软件包爱好者会关心

IGV is package-nerd interesting because it is a heavyweight scientific GUI shipped through developer package managers. It crosses desktop launchers, Java runtime bundling, genomics file formats, command-line helper tools, and citation-grade scientific reproducibility.

时间线

  • 2011: Nature Biotechnology paper introduced Integrative Genomics Viewer.
  • 2012: Public GitHub repository created for the desktop application.
  • 2013: Briefings in Bioinformatics article described high-performance genomics data visualization and exploration with IGV.
  • 2017: Cancer Research article documented IGV use in variant review.
  • 2023: igv.js publication documented an embeddable JavaScript implementation of IGV.

Related projects

  • Related IGV projects include IGV-Web, igv.js, igv-notebook, and igvtools. In package-manager terms, IGV also sits near bioinformatics tools that produce or transform BAM/CRAM, VCF, BED, and genome annotation files.

安全态势

风险级别：绿色

narrow executable package without higher-risk signals.

风险分类器

绿色 风险 · 低 置信度 · appliance

原因

  • narrow executable package without higher-risk signals

信号

  • metadata:no-higher-risk-signals

安装行为

  • 未记录 Homebrew bottle 元数据。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

可执行文件

已安装的可执行文件

命令类型暴露范围备注
igv可执行文件已索引可执行文件从本地可执行文件索引发现。
igvtools可执行文件已索引可执行文件从本地可执行文件索引发现。

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-08-03
管理器版本2.19.8
管理器更新时间2026-06-11
本地数据未知
上游不可用
检测到的最新版本未检测到
  • OK没有生成新鲜度警告。

安装元数据

软件包元数据

软件包键brew:igv
版本2.19.8
软件包管理器Homebrew
主页https://igv.org/doc/desktop/
最后更新2026-06-11T23:03:30Z
Pulseupdated
Bottle未记录
服务未声明

源数据库匹配

其他软件包管理器记录

匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。

Debian apt95%

igv 2.18.5+dfsg-1

Integrative Genomics Viewer

https://www.broadinstitute.org/igv/

sudo apt install igv
  • Section: science
  • Architecture: all
  • 19 依赖
  • 1 可选依赖
  • normalized package name match
  • 匹配方式：Igv
Debian stable package indexes · deb.debian.org · Debian stable package indexes: igv from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

igv

nix profile install nixpkgs#igv
  • normalized package name match
  • 匹配方式：Igv
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/ig/igv/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

igv 2.17.3+dfsg-1

Integrative Genomics Viewer

https://www.broadinstitute.org/igv/

sudo apt install igv
  • Section: universe/science
  • Architecture: all
  • 19 依赖
  • 1 可选依赖
  • normalized package name match
  • 匹配方式：Igv
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: igv from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Scoop95%

extras/igv

scoop install extras/igv
  • normalized package name match
  • 匹配方式：Igv
Scoop official bucket manifest trees · api.github.com · Scoop official bucket manifest trees: bucket/igv.json from https://api.github.com/repos/ScoopInstaller/Extras/git/trees/master?recursive=1

软件包图谱

链接来自本地软件包关系图、补充数据、依赖边、生态匹配和软件包 hub 归属。

来源线索

由仓库数据生成

此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。

使用的来源

  • Geiger risk classifier
  • cross-ecosystem install command graph
  • curated package history
  • external package-manager database matches
  • pkg.so package database
  • pkgdb category and tag curation