# 使用 Homebrew, apt, Nix 安装 fastqc

查看 fastqc 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:fastqc
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install fastqc
```

  证据: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install fastqc
```

  证据: Debian stable package indexes: fastqc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- Nix (92%):

```sh
nix profile install nixpkgs#fastqc
```

  证据: nixpkgs package indexes: pkgs/by-name/fa/fastqc/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## 软件包事实

- **软件包键:** brew:fastqc
- **软件包管理器:** Homebrew
- **版本:** 0.12.1
- **来源摘要:** Quality control tool for high throughput sequence data
- **主页:** <https://www.bioinformatics.babraham.ac.uk/projects/fastqc/>
- **最后更新:** 2026-06-22T14:03:18-07:00
- **已生成:** 2026-08-03T19:37:03+00:00

## 可执行文件

- fastqc (别名)

## 安装行为

- Bottle: 不可用

## 版本和新鲜度

- 页面生成时间: 2026-08-03
- 管理器版本: 0.12.1
## 项目历史与用法

FastQC is Babraham Bioinformatics' quality-control application for high-throughput sequencing data. It analyzes FASTQ, BAM, and SAM inputs and produces graphical and HTML reports that flag unusual properties before downstream analysis.

### 项目历史

FastQC was created by Simon Andrews at Babraham Bioinformatics and had public releases by April 2010, according to the official project changelog. The project page describes it as stable, mature Java software released under GPL v3 or later.

The GitHub repository was created in 2017 as the public source-code home for developers and bug tracing, while the Babraham project page remains the canonical place for users to download compiled packages and read documentation.

### 采用历史

FastQC became a standard first-pass QC tool for high-throughput sequencing because it works both as an interactive GUI and as a non-interactive pipeline step. The project page emphasizes permanent HTML report export and example reports for Illumina, RNA-Seq adapter contamination, small RNA, RRBS, PacBio, and 454 datasets.

Its release history shows long maintenance from 2010 through the 0.12.x releases in 2023, adapting to new sequencing formats and operational needs such as NovaSeq tile handling, Nanopore format changes, SVG output, and memory options.

### 使用方式

Users run FastQC before deeper analysis to get a quick overview of raw sequence quality. Its modules summarize base quality, sequence content, duplication, adapter content, and other signals, then mark modules as pass, warning, or fail.

FastQC can process multiple files in the graphical application, or run headlessly in pipelines to generate one report per input file. It documents no persistent package configuration file or credential store.

### 为什么软件包爱好者会关心

FastQC is a canonical bioinformatics package-manager resident: a Java GUI that is also a CLI pipeline tool, a project website that predates the GitHub source repo, and output reports recognizable across sequencing workflows.

### 时间线

- 2010: Version 0.1 is released.
- 2017: The public GitHub source repository is created.
- 2018: v0.11.8 is released with performance and behavior fixes.
- 2023: v0.12.x releases add modern report and runtime improvements.

### Related projects

- FastQC is commonly paired with FASTQ preprocessing tools such as fastp; fastp's own README describes its HTML report as FastQC-like.

### 来源

- <https://www.bioinformatics.babraham.ac.uk/projects/fastqc>
- <https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help>
- <https://github.com/s-andrews/FastQC>
- <https://github.com/s-andrews/FastQC#readme>
- <https://api.github.com/repos/s-andrews/FastQC/releases>


## 安全说明

narrow executable package without higher-risk signals.

- **Geiger 风险:** 绿色 / 低
- narrow executable package without higher-risk signals

## 其他软件包管理器记录

- Debian apt - fastqc - 0.12.1+dfsg-4: normalized package name match | Debian stable package indexes: fastqc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | quality control for high throughput sequence data | https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
- Nix - fastqc: normalized package name match | nixpkgs package indexes: pkgs/by-name/fa/fastqc/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - fastqc - 0.12.1+dfsg-3: normalized package name match | Ubuntu 24.04 LTS package indexes: fastqc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | quality control for high throughput sequence data | https://www.bioinformatics.babraham.ac.uk/projects/fastqc/


## Combined YAML source

View the package source record on GitHub. [combined/fastqc.yml](https://github.com/mxcl/pkgdb/blob/main/combined/fastqc.yml)


## 来源

- pkg.so package database
- Geiger risk classifier
- curated package history
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph