macOS
Homebrew已验证 · 100%
brew install fastq-toolslocal Homebrew formula metadata
安装
其他安装命令
概览
软件包摘要
Small utilities for working with fastq sequence files
项目链接
命令和别名
- fastq-grep
- fastq-kmers
- fastq-match
- fastq-qscale
- fastq-qual
- fastq-qualadj
- fastq-sample
- fastq-sort
- fastq-uniq
历史
项目历史与用法
fastq-tools is a compact suite of Unix-style utilities for FASTQ sequencing files, including tools for sorting, grepping, k-mer counting, local sequence matching, quality-score tabulation and adjustment, sampling, and duplicate counting.
项目历史
Daniel C. Jones published fastq-tools under an MIT-style license in 2011. The README presents it as a collection of small and efficient programs for common tasks with high-throughput sequencing data in FASTQ format.
The package follows the older autotools-era scientific CLI model: generated configure scripts for release tarballs, autogen.sh for git checkouts, and a short dependency list of PCRE and zlib. The GitHub repository remained active through later tags, with v0.8.3 listed among its published tags.
采用历史
fastq-tools is niche compared with later all-in-one preprocessors, but it fills a durable command-line niche for people who want small composable tools over a single workflow application. Its Homebrew packaging reflects that Unix-toolbox use case.
使用方式
The suite works with ordinary and gzipped FASTQ files. Users pick individual commands such as fastq-sort, fastq-grep, fastq-kmers, fastq-sample, fastq-uniq, and fastq-qual rather than configuring a long-running application.
No persistent configuration or credentials file is documented; behavior is driven by command-line options and the input FASTQ streams or files.
为什么软件包爱好者会关心
fastq-tools is significant as a small-binary, many-command package: it packages the FASTQ format as a shell-friendly toolkit. That makes it closer to classic text-processing utilities than to GUI or report-heavy bioinformatics applications.
时间线
- 2011: The GitHub repository is created and the README copyright names Daniel C. Jones.
- 2011: The project is released as a set of small FASTQ utilities.
- 2022: The repository shows later maintenance activity.
- 2022: v0.8.3 is listed among repository tags.
Related projects
- fastq-tools complements larger FASTQ quality-control and preprocessing tools by providing focused filters and counters for shell pipelines.
来源
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- 未记录 Homebrew bottle 元数据。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
fastq-grep | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-kmers | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-match | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-qscale | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-qual | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-qualadj | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-sample | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-sort | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
fastq-uniq | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-08-03
管理器版本0.8.3
管理器更新时间
本地数据未知
上游不可用
检测到的最新版本未检测到
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:fastq-tools |
|---|---|
| 版本 | 0.8.3 |
| 软件包管理器 | Homebrew |
| 主页 | https://github.com/dcjones/fastq-tools |
| 仓库 | https://github.com/dcjones/fastq-tools |
| Bottle | 未记录 |
| 服务 | 未声明 |
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- pkg.so package database
- pkgdb category and tag curation