# 使用 Homebrew 安装 fastme

查看 fastme 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:fastme
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install fastme
```

  证据: local Homebrew formula metadata

## 软件包事实

- **软件包键:** brew:fastme
- **软件包管理器:** Homebrew
- **版本:** 2.1.6.3
- **来源摘要:** Accurate and fast distance-based phylogeny inference program
- **主页:** <http://www.atgc-montpellier.fr/fastme/>
- **已生成:** 2026-08-03T19:37:03+00:00

## 可执行文件

- fastme (别名)

## 安装行为

- Bottle: 不可用

## 版本和新鲜度

- 页面生成时间: 2026-08-03
- 管理器版本: 2.1.6.3
## 项目历史与用法

FastME is a distance-based phylogeny inference program from the ATGC/LIRMM ecosystem. It focuses on balanced minimum evolution methods and exposes both command-line and web-application use.

### 项目历史

FastME traces back to the 2002 minimum-evolution phylogeny reconstruction work by Desper and Gascuel. The ATGC project page describes the original FastME as using nearest-neighbor interchange and the 2.0 line as adding subtree pruning and regrafting while remaining fast enough to compare with neighbor joining.

The 2015 FastME 2.0 publication and ATGC page frame the modern package as a comprehensive distance-method toolkit, adding distance estimation for DNA and protein data, bootstrapping, and parallel computations.

### 采用历史

FastME is a specialist phylogenetics tool rather than a broad developer utility. Its adoption surface is the ATGC web service, Linux and Mac command-line binaries, Galaxy integration references, and scientific package-manager distribution.

### 使用方式

Users run FastME to infer phylogenetic trees from sequence-derived distances when they want a fast distance method with topology-improvement steps beyond plain neighbor joining. The project does not document a persistent user configuration or credentials file.

### 为什么软件包爱好者会关心

For package maintainers, FastME is the classic scientific CLI shape: an academic algorithm with a paper trail, an official web runner, and a small native command-line binary that needs to stay reproducible across Unix-like systems.

### 时间线

- 2002: Minimum-evolution algorithms underlying FastME are published.
- 2015: FastME 2.0 paper describes the expanded NNI and SPR implementation.
- 2016: ATGC metadata lists the FastME software page as published.
- 2017: The official LIRMM GitLab project is created.

### Related projects

- FastME is related to neighbor joining and other distance-based phylogeny tools; its own documentation emphasizes balanced minimum evolution, NNI, and SPR.

### 来源

- <http://www.atgc-montpellier.fr/fastme/>
- <https://gite.lirmm.fr/atgc/FastME>
- <https://doi.org/10.1093/molbev/msv150>
- <https://doi.org/10.1089/106652702761034136>


## 安全说明

narrow executable package without higher-risk signals.

- **Geiger 风险:** 绿色 / 低
- narrow executable package without higher-risk signals


## Combined YAML source

View the package source record on GitHub. [combined/fastme.yml](https://github.com/mxcl/pkgdb/blob/main/combined/fastme.yml)


## 来源

- pkg.so package database
- Geiger risk classifier
- curated package history
- pkgdb category and tag curation
- cross-ecosystem install command graph