# 使用 Homebrew, Nix 安装 diamond

查看 diamond 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

## 安装

```sh
sudo av install brew:diamond
```

其他安装命令:

### macOS

- Homebrew (100%):

```sh
brew install diamond
```

  证据: local Homebrew formula metadata

### Linux

- Nix (92%):

```sh
nix profile install nixpkgs#diamond
```

  证据: nixpkgs package indexes: pkgs/by-name/di/diamond/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## 软件包事实

- **软件包键:** brew:diamond
- **软件包管理器:** Homebrew
- **版本:** 2.2.4
- **来源摘要:** Accelerated BLAST compatible local sequence aligner
- **主页:** <https://github.com/bbuchfink/diamond>
- **仓库:** <https://github.com/bbuchfink/diamond>
- **最后更新:** 2026-07-13T15:30:35Z
- **已生成:** 2026-08-03T19:37:03+00:00

## 可执行文件

- diamond (别名)

## 安装行为

- Bottle: 不可用

## 版本和新鲜度

- 页面生成时间: 2026-08-03
- 管理器版本: 2.2.4
## 项目历史与用法

DIAMOND is a high-performance sequence aligner for protein and translated DNA searches, positioned as a BLAST-compatible tool for large biological datasets.

### 项目历史

The README says the initial version was developed by Benjamin J. Buchfink at the Huson lab, University of Tuebingen, from 2013 to 2015. Later development continued independently, with support from an EXIST grant in 2018-2019 and the Max Planck Institute for Biology Tuebingen from 2019 to 2024.

### 采用历史

DIAMOND's adoption is tied to its promise of much faster BLAST-like protein and translated DNA alignment. The README highlights 100x to 10,000x BLAST speed, low resource requirements, downloads from GitHub releases, Bioconda availability, Galaxy integration, and citation badges.

### 使用方式

Package users install DIAMOND when they need command-line database creation, protein search, translated DNA search, sequence clustering, taxonomic classification, or BLAST-style tabular, pairwise, and XML outputs.

### 为什么软件包爱好者会关心

DIAMOND is significant because it is a research-grade bioinformatics workhorse that also behaves like a normal packaged CLI. That combination makes it common in reproducible pipelines, containers, Conda environments, Homebrew installs, and HPC workflows.

### 时间线

- 2013-2015: Initial version developed at the Huson lab, University of Tuebingen.
- 2015: Original DIAMOND publication cited in the README.
- 2021: Sensitive protein alignments at tree-of-life scale publication cited in the README.
- 2026: v2.2.2 release published on GitHub.

### Related projects

- The README frames DIAMOND as BLAST-compatible and links it to Bioconda and the European Galaxy server for workflow use.

### 来源

- <https://github.com/bbuchfink/diamond>
- <https://raw.githubusercontent.com/bbuchfink/diamond/master/README.md>
- <https://api.github.com/repos/bbuchfink/diamond>
- <https://github.com/bbuchfink/diamond/releases/tag/v2.2.2>


## 安全说明

没有找到 diamond 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。


## 其他软件包管理器记录

- Nix - diamond: normalized package name match | nixpkgs package indexes: pkgs/by-name/di/diamond/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1


## Combined YAML source

View the package source record on GitHub. [combined/diamond.yml](https://github.com/mxcl/pkgdb/blob/main/combined/diamond.yml)


## 来源

- pkg.so package database
- Geiger risk classifier
- curated package history
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph