macOS
Homebrew已验证 · 100%
brew install diamondlocal Homebrew formula metadata
安装
其他安装命令
Linux
Nix已验证 · 92%
nix profile install nixpkgs#diamondnixpkgs package indexes · pkgs/by-name/di/diamond/package.nix · 来源: api.github.com
概览
软件包摘要
Accelerated BLAST compatible local sequence aligner
项目链接
命令和别名
- diamond
历史
项目历史与用法
DIAMOND is a high-performance sequence aligner for protein and translated DNA searches, positioned as a BLAST-compatible tool for large biological datasets.
项目历史
The README says the initial version was developed by Benjamin J. Buchfink at the Huson lab, University of Tuebingen, from 2013 to 2015. Later development continued independently, with support from an EXIST grant in 2018-2019 and the Max Planck Institute for Biology Tuebingen from 2019 to 2024.
采用历史
DIAMOND's adoption is tied to its promise of much faster BLAST-like protein and translated DNA alignment. The README highlights 100x to 10,000x BLAST speed, low resource requirements, downloads from GitHub releases, Bioconda availability, Galaxy integration, and citation badges.
使用方式
Package users install DIAMOND when they need command-line database creation, protein search, translated DNA search, sequence clustering, taxonomic classification, or BLAST-style tabular, pairwise, and XML outputs.
为什么软件包爱好者会关心
DIAMOND is significant because it is a research-grade bioinformatics workhorse that also behaves like a normal packaged CLI. That combination makes it common in reproducible pipelines, containers, Conda environments, Homebrew installs, and HPC workflows.
时间线
- 2013-2015: Initial version developed at the Huson lab, University of Tuebingen.
- 2015: Original DIAMOND publication cited in the README.
- 2021: Sensitive protein alignments at tree-of-life scale publication cited in the README.
- 2026: v2.2.2 release published on GitHub.
Related projects
- The README frames DIAMOND as BLAST-compatible and links it to Bioconda and the European Galaxy server for workflow use.
来源
安全态势
尚未找到受保护工具覆盖
没有找到 diamond 的匹配本地密钥处理 manifest。Nucleus 软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。
安装行为
- 未记录 Homebrew bottle 元数据。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
diamond | 可执行文件 | 已索引可执行文件 | 从本地可执行文件索引发现。 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-08-03
管理器版本2.2.4
管理器更新时间2026-07-13
本地数据未知
上游不可用
检测到的最新版本未检测到
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:diamond |
|---|---|
| 版本 | 2.2.4 |
| 软件包管理器 | Homebrew |
| 主页 | https://github.com/bbuchfink/diamond |
| 仓库 | https://github.com/bbuchfink/diamond |
| 最后更新 | 2026-07-13T15:30:35Z |
| Pulse | updated |
| Bottle | 未记录 |
| 服务 | 未声明 |
源数据库匹配
其他软件包管理器记录
匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。
Nix95%
diamond
nix profile install nixpkgs#diamond- normalized package name match
- 匹配方式：Diamond
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- external package-manager database matches
- pkg.so package database
- pkgdb category and tag curation