brew / 排名 9393

使用 Homebrew, apt 安装 cutadapt

查看 cutadapt 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

安装命令安全说明

安装

其他安装命令

macOS

Homebrew已验证 · 100%

brew install cutadapt

local Homebrew formula metadata

Linux

Debian apt已验证 · 92%

sudo apt install cutadapt

Debian stable package indexes · cutadapt · 来源: deb.debian.org

概览

软件包摘要

Removes adapter sequences from sequencing reads

项目链接

命令和别名

cutadapt

历史

项目历史与用法

Cutadapt is a bioinformatics command-line tool for finding and removing adapter sequences, primers, poly-A tails, and other unwanted sequence from high-throughput sequencing reads. Its documentation presents trimming as a routine cleanup step for small-RNA, amplicon, and other sequencing workflows.

项目历史

The project documentation says Cutadapt development began at TU Dortmund University in Prof. Sven Rahmann's group and is now developed within NBIS, the National Bioinformatics Infrastructure Sweden. The documentation copyright begins in 2010, and the changelog records early public releases starting with v0.1 in September 2010.

采用历史

Cutadapt became part of the standard sequencing-preprocessing toolbox because it solves a common, format-heavy cleanup problem with a scriptable CLI. The official README links to PyPI, source code, documentation, and a Galaxy platform wrapper, and its badges point to Python packaging and Bioconda distribution.

使用方式

The tool is normally used in pipelines before alignment or downstream analysis: users provide FASTQ/FASTA reads and adapter or primer patterns, then ask Cutadapt to trim, filter, modify, demultiplex, and report results. Its changelog shows long-running attention to paired-end reads, JSON reports, demultiplexing, compression speed, Python version support, and reproducible output.

为什么软件包爱好者会关心

Cutadapt is package-manager significant because it bridges Python packaging, bioinformatics channels, and Unix CLI workflows. It is both a Python package and a command-line executable, with stable documentation, a citation, and a long changelog that makes downstream packaging and reproducibility work tractable.

时间线

2010: v0.1 appears in the official changelog.
2011: v1.0 released, according to the changelog.
2012: Public GitHub repository created.
2019: v2.0 released with documented backward-incompatible changes.
2024: v5.0 released with demultiplexing behavior changes and performance-related defaults.
2025: v5.2 documented in the stable changelog.

Related projects

The official README links Cutadapt to PyPI, Bioconda packaging, Galaxy's tools-iuc wrapper, and its Read the Docs documentation.

来源

安全态势

风险级别：绿色

narrow executable package without higher-risk signals.

风险分类器

绿色风险 · 低置信度 · appliance

原因

narrow executable package without higher-risk signals

信号

metadata:no-higher-risk-signals

安装行为

未记录 Homebrew bottle 元数据。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

可执行文件

已安装的可执行文件

命令	类型	暴露范围	备注
`cutadapt`	可执行文件	已索引可执行文件	从本地可执行文件索引发现。

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-08-03

管理器版本5.2

管理器更新时间2026-05-04

本地数据未知

上游不可用

检测到的最新版本未检测到

OK没有生成新鲜度警告。

安装元数据

软件包元数据

软件包键	brew:cutadapt
版本	5.2
软件包管理器	Homebrew
主页	https://cutadapt.readthedocs.io
仓库	https://github.com/marcelm/cutadapt
最后更新	2026-05-04T20:29:09Z
Pulse	updated
Bottle	未记录
服务	未声明

源数据库匹配

其他软件包管理器记录

匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。

Debian apt95%

cutadapt 4.7-2

Clean biological sequences from high-throughput sequencing reads

https://cutadapt.readthedocs.io/

sudo apt install cutadapt

Section: science
Architecture: all
Source Package: python-cutadapt
2 依赖
normalized package name match
匹配方式：Cutadapt

Debian stable package indexes · deb.debian.org · Debian stable package indexes: cutadapt from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

Ubuntu apt95%

cutadapt 4.4-1build2