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使用 Homebrew, apt, Nix 安装 abpoa

查看 abpoa 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

安装命令安全说明

安装

其他安装命令

macOS

Homebrew已验证 · 100%
brew install abpoa

local Homebrew formula metadata

Linux

Debian apt已验证 · 92%
sudo apt install abpoa

Debian stable package indexes · abpoa · 来源: deb.debian.org

Nix已验证 · 92%
nix profile install nixpkgs#abpoa

nixpkgs package indexes · pkgs/by-name/ab/abpoa/package.nix · 来源: api.github.com

概览

软件包摘要

SIMD-based C library for fast partial order alignment using adaptive band

命令和别名

  • abpoa

历史

项目历史与用法

abPOA is a C library and command-line tool for adaptive-banded partial-order alignment, multiple sequence alignment, and consensus generation. Package maintainers care about it because it exposes a performance-sensitive bioinformatics primitive as a small buildable C package with command-line, conda, Homebrew, and Python-facing usage.

项目历史

The first GitHub release, v1.0.0, was published on April 15, 2020. The project was described in Bioinformatics later in 2020 as an SIMD-based C library for fast partial order alignment using adaptive banding, and the upstream README presents it as an extended version of partial-order alignment with adaptive banded dynamic programming and SIMD implementation.

采用历史

The README documents installation via conda and Homebrew, source builds, prebuilt Linux and macOS binaries, and a pyabpoa Python package. The input metadata also shows distribution packaging in Homebrew, Debian, Nix, and Ubuntu, which is typical for bioinformatics tools that need both reproducible workflows and local command-line execution.

使用方式

abPOA accepts FASTA, FASTQ, and gzip-compressed FASTA/FASTQ input, performs sequence-to-graph alignment, emits consensus FASTA by default, and can also emit row-column MSA, GFA graph output, amino-acid consensus, and graph plots. The README documents global, local, and extension alignment modes plus linear, affine, and convex gap penalties.

为什么软件包爱好者会关心

The package is significant because it turns a common long-read consensus and MSA building block into a portable SIMD-aware command-line dependency. Its release notes continue to mention packaging-facing work such as pyproject.toml for pyabpoa and SIMD dispatch.

时间线

  • 2020: First public GitHub release v1.0.0.
  • 2020: Bioinformatics article published for abPOA.
  • 2025: v1.5.4 added SIMD dispatch and Python 3.13 installation fixes.
  • 2026: v1.5.6 added easier incremental MSA and pyproject.toml for pyabpoa.

Related projects

  • The README explicitly frames abPOA as an extension of partial-order alignment and references heaviest bundling for consensus generation. It also ships pyabpoa for Python users and connects to Bioconda and Homebrew packaging for workflow installation.

安全态势

风险级别：绿色

library-like package without higher-risk signals.

风险分类器

绿色 风险 · 低 置信度 · appliance

原因

  • library-like package without higher-risk signals

信号

  • metadata:library-like

安装行为

  • 未记录 Homebrew bottle 元数据。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

可执行文件

已安装的可执行文件

命令类型暴露范围备注
abpoa可执行文件已索引可执行文件从本地可执行文件索引发现。

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-08-03
管理器版本1.5.6
管理器更新时间2026-05-26
本地数据未知
上游不可用
检测到的最新版本未检测到
  • OK没有生成新鲜度警告。

安装元数据

软件包元数据

软件包键brew:abpoa
版本1.5.6
软件包管理器Homebrew
主页https://github.com/yangao07/abPOA
仓库https://github.com/yangao07/abPOA
最后更新2026-05-26T23:37:46-04:00
Pulseupdated
Bottle未记录
服务未声明

源数据库匹配

其他软件包管理器记录

匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。

Debian apt95%

abpoa 1.5.3-1+b4

adaptive banded Partial Order Alignment

https://github.com/yangao07/abPOA

sudo apt install abpoa
  • Section: science
  • Architecture: amd64
  • Source Package: abpoa
  • 3 依赖
  • normalized package name match
  • 匹配方式：Abpoa
Debian stable package indexes · deb.debian.org · Debian stable package indexes: abpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Debian apt95%

python3-pyabpoa 1.5.3-1+b4

adaptive banded Partial Order Alignment - python3 module

https://github.com/yangao07/abPOA

sudo apt install python3-pyabpoa
  • Section: python
  • Architecture: amd64
  • Source Package: abpoa
  • 3 依赖
  • normalized package name match
  • 匹配方式：Abpoa
Debian stable package indexes · deb.debian.org · Debian stable package indexes: python3-pyabpoa from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Nix95%

abpoa

nix profile install nixpkgs#abpoa
  • normalized package name match
  • 匹配方式：Abpoa
nixpkgs package indexes · api.github.com · nixpkgs package indexes: pkgs/by-name/ab/abpoa/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
Ubuntu apt95%

abpoa 1.5.1-1build1

adaptive banded Partial Order Alignment

https://github.com/yangao07/abPOA

sudo apt install abpoa
  • Section: universe/science
  • Architecture: amd64
  • 3 依赖
  • normalized package name match
  • 匹配方式：Abpoa
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: abpoa from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz
Ubuntu apt95%

python3-pyabpoa 1.5.1-1build1

adaptive banded Partial Order Alignment - python3 module

https://github.com/yangao07/abPOA

sudo apt install python3-pyabpoa
  • Section: universe/python
  • Architecture: amd64
  • Source Package: abpoa
  • 3 依赖
  • normalized package name match
  • 匹配方式：Abpoa
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: python3-pyabpoa from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz

软件包图谱

链接来自本地软件包关系图、补充数据、依赖边、生态匹配和软件包 hub 归属。

来源线索

由仓库数据生成

此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。

使用的来源

  • Geiger risk classifier
  • cross-ecosystem install command graph
  • curated package history
  • external package-manager database matches
  • pkg.so package database
  • pkgdb category and tag curation