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使用 Homebrew, apt 安装 sickle

查看 sickle 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。

安装命令安全说明

安装

其他安装命令

macOS

Homebrew已验证 · 100%
brew install sickle

local Homebrew formula metadata

Linux

Debian apt已验证 · 92%
sudo apt install sickle

Debian stable package indexes · sickle · 来源: deb.debian.org

概览

软件包摘要

Windowed adaptive trimming for FASTQ files using quality

命令和别名

  • sickle

历史

项目历史与用法

Sickle is a C command-line program that trims low-quality sequence from FASTQ reads with an adaptive sliding-window algorithm and discards reads below a chosen length threshold.

项目历史

Najoshi and Fass developed Sickle as a sliding-window, adaptive quality trimmer for FASTQ sequencing reads. Upstream's requested software citation dates the project to 2011 and identifies version 1.33.

采用历史

Sickle became available through bioinformatics and operating-system packaging channels. The supplied metadata records Homebrew, Debian, and Ubuntu packages, while the official repository includes an XML descriptor for integration into local Galaxy installations.

使用方式

Sickle offers `se` and `pe` modes for single-end and paired-end reads. Users specify FASTQ inputs, quality encoding, output files, and optional quality or length thresholds; paired-end mode can preserve pairs, emit orphaned reads separately, or produce interleaved output.

为什么软件包爱好者会关心

Sickle captures an earlier generation of compact, native bioinformatics command-line tools: a focused C executable, compressed-FASTQ support through zlib, explicit quality-encoding selection, and straightforward composition in sequencing pipelines. Its Galaxy descriptor also bridges shell-oriented and workflow-platform packaging.

时间线

  • 2011: Upstream's requested citation dates Sickle and version 1.33 to this year.
  • Subsequent packaging: Sickle became available through Homebrew, Debian, and Ubuntu.

Related projects

  • Galaxy can expose Sickle through the XML tool descriptor shipped in the repository.
  • kseq.h, bundled with the source, provides sequence parsing.
  • zlib provides compressed-input support.

安全态势

风险级别：绿色

narrow executable package without higher-risk signals.

风险分类器

绿色 风险 · 低 置信度 · appliance

原因

  • narrow executable package without higher-risk signals

信号

  • metadata:no-higher-risk-signals

安装行为

  • formula 元数据中未记录 Homebrew post-install 钩子。
  • Homebrew bottle 元数据适用于 6 个平台目标。

建议审查

在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。

可执行文件

已安装的可执行文件

命令类型暴露范围备注
sicklecli全局可执行文件

新鲜度

版本和新鲜度

这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。

页面生成时间2026-09-19
管理器版本1.33
管理器更新时间2026-09-13
本地数据OK
上游当前
检测到的最新版本v1.33

https://github.com/najoshi/sickle

  • OK没有生成新鲜度警告。

安装元数据

软件包元数据

软件包键brew:sickle
版本1.33
软件包管理器Homebrew
软件包管理器页面https://formulae.brew.sh/formula/sickle
主页https://github.com/najoshi/sickle
仓库https://github.com/najoshi/sickle
许可证MIT
源码归档https://github.com/najoshi/sickle/archive/refs/tags/v1.33.tar.gz
最后更新2026-09-13T09:05:23Z
Pulseupdated
Bottle可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux)
Homebrew post-install未定义
服务未声明

注册表事实

源数据库详情

Source DatabaseHomebrew formula API
Taphomebrew/core
Full Namesickle
Version Scheme0
Revision0
Bottle Stable Root URLhttps://ghcr.io/v2/homebrew/core
Deprecatedno
Disabledno
Keg Onlyno
URL Keys
  • stable

源数据库匹配

其他软件包管理器记录

匹配项来自外部软件包管理器索引，并与本地 Automic Vault 软件包链接分开显示。

Debian apt95%

sickle 1.33+git20150314.f3d6ae3-2

windowed adaptive trimming tool for FASTQ files using quality

https://github.com/najoshi/sickle

sudo apt install sickle
  • Section: science
  • Architecture: amd64
  • 2 依赖
  • normalized package name match
  • 匹配方式：Sickle
Debian stable package indexes · deb.debian.org · Debian stable package indexes: sickle from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz
Ubuntu apt95%

sickle 1.33+git20150314.f3d6ae3-2

windowed adaptive trimming tool for FASTQ files using quality

https://github.com/najoshi/sickle

sudo apt install sickle
  • Section: universe/science
  • Architecture: amd64
  • 2 依赖
  • normalized package name match
  • 匹配方式：Sickle
Ubuntu 24.04 LTS package indexes · archive.ubuntu.com · Ubuntu 24.04 LTS package indexes: sickle from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz

软件包图谱

链接来自本地软件包关系图、补充数据、依赖边、生态匹配和软件包 hub 归属。

相同工作流

  • trim-galoreShares pkgdb curated category or tags: bioinformatics, cli, fastq, ngs, science.
  • fastqcShares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing.
  • bbtoolsShares pkgdb curated category or tags: bioinformatics, cli, ngs, science, sequencing.
  • fastpShares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing.
  • fgbioShares pkgdb curated category or tags: bioinformatics, cli, ngs, science, sequencing.
  • adapterremovalShares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing.

来源线索

由仓库数据生成

此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。

使用的来源

  • Geiger risk classifier
  • cross-ecosystem install command graph
  • curated package history
  • external package-manager database matches
  • package relationship graph
  • package version freshness
  • package-page enrichment
  • pkg.so package database
  • pkgdb category and tag curation