macOS
Homebrew已验证 · 100%
brew install ropebwt3local Homebrew formula metadata
安装
其他安装命令
概览
软件包摘要
BWT construction and search
历史
项目历史与用法
ropebwt3 constructs run-length-encoded Burrows-Wheeler Transform/FM-index data structures for large DNA sequence sets and searches them for exact matches, local alignments, and haplotype diversity.
项目历史
Heng Li developed ropebwt3 as a successor in the ropeBWT line for construction and searching of FM-indexes over large, highly redundant DNA collections.
A 2024 Bioinformatics paper described BWT construction and search at terabase scale. Subsequent 3.x releases expanded search and alignment behavior.
采用历史
ropebwt3 is distributed through Homebrew. The project also supplies downloadable prebuilt indexes for bacterial and human pangenomic data, supporting practical use beyond source builds.
使用方式
Typical workflows build an FMR or FMD index from FASTA/FASTQ data, generate a sampled suffix array, and use `mem`, `sw`, or `hapdiv` for sequence search and alignment.
It is optimized for redundant collections such as pangenomes and high-coverage reads rather than routine high-throughput read alignment.
为什么软件包爱好者会关心
The package brings terabase-scale pangenome indexing to a conventional command-line installation workflow. Its distinction between dynamic FMR files for construction and compact, memory-mappable FMD files for search is particularly relevant to performance-conscious bioinformatics users.
时间线
- 2024: The ropebwt3 terabase-scale methods paper appeared in Bioinformatics.
- 2025: Version 3.10 added multi-position output to the `sw` command and updated suffix-array construction code.
Related projects
- ropebwt2 is the earlier incremental FM-index construction project.
- The software incorporates a revised BWA-SW approach for local alignment and interoperates with tools such as seqtk when preparing index metadata.
来源
- https://github.com/lh3/ropebwt3#readme
- https://github.com/lh3/ropebwt3/releases
- source_facts.package-manager
安全态势
风险级别：绿色
narrow executable package without higher-risk signals.
风险分类器
绿色 风险 · 低 置信度 · appliance
原因
- narrow executable package without higher-risk signals
信号
- metadata:no-higher-risk-signals
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
- 安装时包含 1 个运行时依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
ropebwt3 | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-09-19
管理器版本3.10
管理器更新时间2026-09-12
本地数据OK
上游当前
检测到的最新版本v3.10
https://github.com/lh3/ropebwt3
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:ropebwt3 |
|---|---|
| 版本 | 3.10 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/ropebwt3 |
| 主页 | https://github.com/lh3/ropebwt3 |
| 仓库 | https://github.com/lh3/ropebwt3 |
| 许可证 | MIT AND Apache-2.0 |
| 源码归档 | https://github.com/lh3/ropebwt3/archive/refs/tags/v3.10.tar.gz |
| 最后更新 | 2026-09-12T11:02:20Z |
| Pulse | updated |
| 依赖 | libomp |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | ropebwt3 |
| Version Scheme | 0 |
| Revision | 0 |
| Head Version | HEAD |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- Geiger risk classifier
- cross-ecosystem install command graph
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment
- pkg.so package database
- pkgdb category and tag curation