# 使用 Homebrew, apt 安装 genometools 查看 genometools 的安装路径、可执行文件、元数据以及面向 AI 代理工作流的安全说明。 ## 安装 ```sh sudo av install brew:genometools ``` 其他安装命令: ### macOS - Homebrew (100%): ```sh brew install genometools ``` 证据: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install genometools ``` 证据: Debian stable package indexes: genometools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz ## 软件包事实 - **软件包键:** brew:genometools - **软件包管理器:** Homebrew - **软件包管理器页面:** - **版本:** 1.6.6 - **来源摘要:** Versatile open source genome analysis software - **主页:** - **仓库:** - **上游文档:** - **许可证:** ISC - **源码归档:** - **已生成:** 2026-08-04T22:13:35+00:00 ## 可执行文件 - genometools-config (cli) - genometools-config (别名) ## 依赖 - cairo - gettext - glib - harfbuzz - pango - tre ## 构建依赖 - pkgconf - python@3.14 ## macOS 提供的库 - bzip2 - expat - sqlite ## 安装行为 - post-install 钩子: 未定义 - Bottle: 可用 于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## 版本和新鲜度 - 页面生成时间: 2026-08-04 - 管理器版本: 1.6.6 - 本地数据: OK - 上游仓库: https://github.com/genometools/genometools - 检测到的最新版本: v1.6.6 (当前) - 信息: No package-manager update timestamp was available. ## 项目历史与用法 GenomeTools is an open source genome informatics system centered on a single gt command and the libgenometools C library. It collects command-line tools, APIs, and published bioinformatics components for structured genome annotations, sequence analysis, annotation visualization, and related workflows. ### 项目历史 The project archive shows public source tarballs beginning with the 0.6.x series in 2007 and a 1.0.0 release later that year. The official overview describes the system as a collection of bioinformatics tools combined into one binary and based on libgenometools, with development credited to Gordon Gremme, Sascha Steinbiss, Stefan Kurtz, and contributors at the University of Hamburg's Genome Informatics group. The 2013 GenomeTools publication framed the project as a comprehensive software library for efficient processing of structured genome annotations. Around that core, the official site lists separately published components such as LTRharvest, Tallymer, AnnotationSketch, LTRdigest, GtEncseq, Readjoiner, and related tools built on the same library. ### 采用历史 GenomeTools gained significance through bioinformatics publications and through its packaging as a reusable command-line suite rather than a single-purpose script. Its official site points to manuals, manpage-style tool documentation, a C API, Lua-based gtscript documentation, and a GFF3 validator, which made it useful both for end users and developers building genome-annotation workflows. ### 使用方式 Practitioners use GenomeTools for tasks such as validating and processing GFF3, drawing genome annotations, finding LTR retrotransposons, counting or indexing sequence features, assembling reads, and scripting analyses around the gt command. Developers can use libgenometools and the documented C API when command-line composition is not enough. ### 为什么软件包爱好者会关心 GenomeTools is a good example of scientific software that package managers preserve because reproducible research workflows depend on exact command-line behavior, compiled C libraries, and long-lived manual pages. ### 时间线 - 2007: the project archive listed the 0.6.x series and 1.0.0 tarballs. - 2008: the official site listed published GenomeTools components including LTRharvest and Tallymer. - 2013: the GenomeTools software-library paper appeared in IEEE/ACM Transactions on Computational Biology and Bioinformatics. - 2021: the project archive listed the 1.6.2 tarball. ### Related projects - Related GenomeTools components and adjacent projects include libgenometools, gt, AnnotationSketch, LTRharvest, LTRdigest, Tallymer, GtEncseq, Readjoiner, GenomeThreader, and GFF3 validation tooling. ### 来源 - - - - - - ## 安全说明 narrow executable package without higher-risk signals. - **Geiger 风险:** 绿色 / 低 - narrow executable package without higher-risk signals ## 源数据库详情 - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** genometools - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Conflicts With:** gastown, libslax - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## 其他软件包管理器记录 - Debian apt - genometools - 1.6.5+ds-2.2: normalized package name match | Debian stable package indexes: genometools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | versatile genome analysis toolkit | http://genometools.org - Debian apt - genometools-common - 1.6.5+ds-2.2: normalized package name match | Debian stable package indexes: genometools-common from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | shared data files for GenomeTools | http://genometools.org - Debian apt - genometools-doc - 1.6.5+ds-2.2: normalized package name match | Debian stable package indexes: genometools-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | documentation for GenomeTools | http://genometools.org - Debian apt - libgenometools0-dev - 1.6.5+ds-2.2: normalized package name match | Debian stable package indexes: libgenometools0-dev from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | development files for GenomeTools | http://genometools.org - Debian apt - libgenometools0t64 - 1.6.5+ds-2.2: normalized package name match | Debian stable package indexes: libgenometools0t64 from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | versatile genome analysis library | http://genometools.org - Debian apt - python3-genometools - 1.6.5+ds-2.2: normalized package name match | Debian stable package indexes: python3-genometools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Python3 bindings for genometools | http://genometools.org - Ubuntu apt - genometools - 1.6.5+ds-2.1ubuntu2: normalized package name match | Ubuntu 24.04 LTS package indexes: genometools from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | versatile genome analysis toolkit | http://genometools.org - Ubuntu apt - genometools-common - 1.6.5+ds-2.1ubuntu2: normalized package name match | Ubuntu 24.04 LTS package indexes: genometools-common from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | shared data files for GenomeTools | http://genometools.org - Ubuntu apt - genometools-doc - 1.6.5+ds-2.1ubuntu2: normalized package name match | Ubuntu 24.04 LTS package indexes: genometools-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | documentation for GenomeTools | http://genometools.org - Ubuntu apt - libgenometools0-dev - 1.6.5+ds-2.1ubuntu2: normalized package name match | Ubuntu 24.04 LTS package indexes: libgenometools0-dev from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | development files for GenomeTools | http://genometools.org - Ubuntu apt - libgenometools0t64 - 1.6.5+ds-2.1ubuntu2: normalized package name match | Ubuntu 24.04 LTS package indexes: libgenometools0t64 from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | versatile genome analysis library | http://genometools.org - Ubuntu apt - python3-genometools - 1.6.5+ds-2.1ubuntu2: normalized package name match | Ubuntu 24.04 LTS package indexes: python3-genometools from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Python3 bindings for genometools | http://genometools.org ## 相关链接 - [Terminal utility packages](https://pkg.so/zh-hans/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://pkg.so/zh-hans/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://pkg.so/zh-hans/scientific-computing-tools/) - Matched scientific computing metadata. - [Homebrew utility packages](https://pkg.so/zh-hans/brew-utility-packages/) - Matched Homebrew package provider. - [glib](https://pkg.so/zh-hans/brew/glib/) - Runtime dependency declared by Homebrew. - [harfbuzz](https://pkg.so/zh-hans/brew/harfbuzz/) - Runtime dependency declared by Homebrew. - [gettext](https://pkg.so/zh-hans/brew/gettext/) - Runtime dependency declared by Homebrew. - [pango](https://pkg.so/zh-hans/brew/pango/) - Runtime dependency declared by Homebrew. - [cairo](https://pkg.so/zh-hans/brew/cairo/) - Runtime dependency declared by Homebrew. - [tre](https://pkg.so/zh-hans/brew/tre/) - Runtime dependency declared by Homebrew. - [python@3.14](https://pkg.so/zh-hans/brew/python-3-14/) - Build dependency declared by Homebrew. - [pkgconf](https://pkg.so/zh-hans/brew/pkgconf/) - Build dependency declared by Homebrew. - [htslib](https://pkg.so/zh-hans/brew/htslib/) - Shares pkgdb curated category or tags: bioinformatics, c-library, cli, science. - [abpoa](https://pkg.so/zh-hans/brew/abpoa/) - Shares pkgdb curated category or tags: bioinformatics, c-library, cli, science. - [freesasa](https://pkg.so/zh-hans/brew/freesasa/) - Shares pkgdb curated category or tags: bioinformatics, c-library, cli, science. - [gts](https://pkg.so/zh-hans/brew/gts/) - Shares pkgdb curated category or tags: c-library, cli, science. - [fftw](https://pkg.so/zh-hans/brew/fftw/) - Shares pkgdb curated category or tags: c-library, cli, science. - [cfitsio](https://pkg.so/zh-hans/brew/cfitsio/) - Shares pkgdb curated category or tags: c-library, cli, science. - [openslide](https://pkg.so/zh-hans/brew/openslide/) - Shares pkgdb curated category or tags: c-library, cli, science. - [libdicom](https://pkg.so/zh-hans/brew/libdicom/) - Shares pkgdb curated category or tags: c-library, cli, science. - [gpredict](https://pkg.so/zh-hans/brew/gpredict/) - Local package facts share a topical domain. Shared terms: cairo, cli, gettext, glib, harfbuzz. - [vsearch](https://pkg.so/zh-hans/brew/vsearch/) - Local package facts share a topical domain. Shared terms: analysis, bioinformatics, cli, open, science. ## Combined YAML source View the package source record on GitHub. [combined/genometools.yml](https://github.com/mxcl/pkgdb/blob/main/combined/genometools.yml) ## 来源 - pkg.so package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - pkgdb category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph