macOS
Homebrew已验证 · 100%
brew install chopperlocal Homebrew formula metadata
安装
其他安装命令
概览
软件包摘要
Filter and trim long-read sequencing data by quality and length
历史
项目历史与用法
chopper is a Rust command-line program for filtering and trimming FASTQ reads from long-read sequencing platforms such as Oxford Nanopore and PacBio. It is designed as a faster reimplementation of functionality associated with the Python tools NanoFilt and NanoLyse.
项目历史
The project's GitHub repository was created in August 2020. Its first published GitHub release was v0.1.0 in November 2022, and development has continued through later releases that expanded its filtering and trimming strategies.
采用历史
The project distributes ready-to-use binaries from GitHub Releases and documents installation through Bioconda. The supplied package metadata also records a Homebrew formula, making it available in both bioinformatics-focused and general-purpose package-manager workflows.
使用方式
chopper fits Unix sequencing pipelines by reading FASTQ from standard input and writing accepted reads to standard output. Common invocations set minimum quality and length thresholds, optionally crop or quality-trim reads, and pipe compressed data through gzip or pigz.
为什么软件包爱好者会关心
For package-oriented users, chopper is notable as a small Rust replacement for older Python tooling that preserves stream-based composition while offering standalone release binaries and Bioconda and Homebrew distribution. Its stdin/stdout interface makes it easy to slot into reproducible shell pipelines without project-specific configuration.
时间线
- 2020: GitHub repository created.
- 2022: First GitHub release, v0.1.0.
- 2026: v0.13.0 released with split-window support for low-quality splitting.
Related projects
- NanoFilt and NanoLyse are the Python tools whose functionality motivated chopper's Rust implementation.
- pigz is recommended in the official README for overlapping FASTQ compression or decompression with chopper's processing.
来源
安全态势
尚未找到受保护工具覆盖
没有找到 chopper 的匹配本地密钥处理 manifest。软件包元数据仍在此发布，以便未来覆盖拥有稳定的软件包 URL。
安装行为
- formula 元数据中未记录 Homebrew post-install 钩子。
- Homebrew bottle 元数据适用于 6 个平台目标。
- 构建元数据列出 2 个构建依赖。
建议审查
在无人值守的代理使用前，请检查该工具是否读取明文凭据、写入远程状态、发布制品或调用插件。
可执行文件
已安装的可执行文件
| 命令 | 类型 | 暴露范围 | 备注 |
|---|---|---|---|
chopper | cli | 全局可执行文件 |
新鲜度
版本和新鲜度
这些信号区分页生成时间、软件包管理器活动和上游发布比较。只有存在证据 URL 和可比较版本时，才会提示版本落后。
页面生成时间2026-08-04
管理器版本0.13.0
管理器更新时间2026-07-15
本地数据OK
上游当前
检测到的最新版本v0.13.0
https://github.com/wdecoster/chopper
- OK没有生成新鲜度警告。
安装元数据
软件包元数据
| 软件包键 | brew:chopper |
|---|---|
| 版本 | 0.13.0 |
| 软件包管理器 | Homebrew |
| 软件包管理器页面 | https://formulae.brew.sh/formula/chopper |
| 主页 | https://github.com/wdecoster/chopper |
| 仓库 | https://github.com/wdecoster/chopper |
| 许可证 | MIT |
| 源码归档 | https://github.com/wdecoster/chopper/archive/refs/tags/v0.13.0.tar.gz |
| 最后更新 | 2026-07-15T10:09:42Z |
| Pulse | updated |
| 构建依赖 | cmake, rust |
| Bottle | 可用 (于 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux) |
| Homebrew post-install | 未定义 |
| 服务 | 未声明 |
注册表事实
源数据库详情
| Source Database | Homebrew formula API |
|---|---|
| Tap | homebrew/core |
| Full Name | chopper |
| Version Scheme | 0 |
| Revision | 0 |
| Head Version | HEAD |
| Bottle Stable Root URL | https://ghcr.io/v2/homebrew/core |
| Deprecated | no |
| Disabled | no |
| Keg Only | no |
| URL Keys |
|
来源线索
由仓库数据生成
此页面由 av-web 从 scripts/generate-pkg-sqlite.py 生成的私有软件包 SQLite 工件提供。
Combined YAML source
View the package source record on GitHub.
使用的来源
- cross-ecosystem install command graph
- curated package history
- package relationship graph
- package version freshness
- package-page enrichment
- pkg.so package database
- pkgdb category and tag curation