# Install proteinortho with Homebrew, apt

Detecting orthologous genes within different species. Version 6.3.6 via Homebrew; verified 2026-06-25. Also installable with debian: sudo apt install proteinortho.

## Install

```sh
sudo av install brew:proteinortho
```

Additional install commands:

### macOS

- Homebrew (100%):

```sh
brew install proteinortho
```

  Evidence: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install proteinortho
```

  Evidence: Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

## Package facts

- **Package key:** brew:proteinortho
- **Package manager:** Homebrew
- **Version:** 6.3.6
- **Source summary:** Detecting orthologous genes within different species
- **Homepage:** <https://gitlab.com/paulklemm_PHD/proteinortho>
- **Last updated:** 2026-06-25T13:38:03+02:00
- **Generated:** 2026-08-03T19:37:03+00:00

## Executables

- proteinortho (alias)
- proteinortho2html.pl (alias)
- proteinortho2tree.pl (alias)
- proteinortho2xml.pl (alias)
- proteinortho6.pl (alias)
- proteinortho_cleanupblastgraph (alias)
- proteinortho_clustering (alias)
- proteinortho_compareProteinorthoGraphs.pl (alias)
- proteinortho_do_mcl.pl (alias)
- proteinortho_extract_from_graph.pl (alias)
- proteinortho_ffadj_mcs.py (alias)
- proteinortho_formatUsearch.pl (alias)
- proteinortho_grab_proteins.pl (alias)
- proteinortho_graphMinusRemovegraph (alias)
- proteinortho_history.pl (alias)
- proteinortho_singletons.pl (alias)
- proteinortho_summary.pl (alias)

## Install behavior

- Bottle: not available

## Freshness

- Page generated: 2026-08-03
- Package-manager version: 6.3.6

## Security Notes

infrastructure mutation or orchestration signal.

- **Geiger risk:** orange / medium
- infrastructure mutation or orchestration signal

## Other Package-Manager Records

- Debian apt - proteinortho - 6.3.1+dfsg-1: normalized package name match | Debian stable package indexes: proteinortho from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Detection of (Co-)orthologs in large-scale protein analysis | https://gitlab.com/paulklemm_PHD/proteinortho
- Ubuntu apt - proteinortho - 6.3.1+dfsg-1: normalized package name match | Ubuntu 24.04 LTS package indexes: proteinortho from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Detection of (Co-)orthologs in large-scale protein analysis | https://gitlab.com/paulklemm_PHD/proteinortho


## Combined YAML source

View the package source record on GitHub. [combined/proteinortho.yml](https://github.com/mxcl/pkgdb/blob/main/combined/proteinortho.yml)


## Sources

- pkg.so package database
- Geiger risk classifier
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph