macOS
Homebrewverified · 100%
brew install pamllocal Homebrew formula metadata
brew / rank 7640
Install paml with Homebrew, apt, Nix
Phylogenetic analyses of DNA or protein sequences using maximum likelihood. Version 4.10.10 via Homebrew; verified from local package data. Also installable with debian: sudo apt install paml.
install
Additional install commands
Linux
Debian aptverified · 92%
sudo apt install pamlDebian stable package indexes · paml · source: deb.debian.org
Nixverified · 92%
nix profile install nixpkgs#pamlnixpkgs package indexes · pkgs/by-name/pa/paml/package.nix · source: api.github.com
overview
Package summary
Phylogenetic analyses of DNA or protein sequences using maximum likelihood
Project links
Commands and aliases
- baseml
- basemlg
- chi2
- codeml
- evolver
- infinitesites
- mcmctree
- pamp
- yn00
security posture
Risk level: green
narrow executable package without higher-risk signals.
Risk classifier
green risk · low confidence · appliance
Why
- narrow executable package without higher-risk signals
Signals
- metadata:no-higher-risk-signals
Install behavior
- No Homebrew bottle metadata was recorded.
Recommended review
Before unattended agent use, check whether the tool reads plaintext credentials, writes remote state, publishes artifacts, or shells out to plugins.
executables
Installed executables
| Command | Kind | Exposure | Note |
|---|---|---|---|
baseml | executable | indexed executable | Discovered from the local executable index. |
basemlg | executable | indexed executable | Discovered from the local executable index. |
chi2 | executable | indexed executable | Discovered from the local executable index. |
codeml | executable | indexed executable | Discovered from the local executable index. |
evolver | executable | indexed executable | Discovered from the local executable index. |
infinitesites | executable | indexed executable | Discovered from the local executable index. |
mcmctree | executable | indexed executable | Discovered from the local executable index. |
pamp | executable | indexed executable | Discovered from the local executable index. |
yn00 | executable | indexed executable | Discovered from the local executable index. |
freshness
Version and freshness
These signals separate page generation age, package-manager activity, and upstream release comparison. Version lag is warned only when an evidence URL and comparable versions are present.
page generated2026-08-03
manager version4.10.10
manager updated
local dataunknown
upstreamnot available
latest detectednot detected
- okNo freshness warnings were generated.
install metadata
Package metadata
| Package key | brew:paml |
|---|---|
| Version | 4.10.10 |
| Package manager | Homebrew |
| Homepage | https://github.com/abacus-gene/paml |
| Repository | https://github.com/abacus-gene/paml |
| Bottle | not recorded |
| Service | none declared |
source database matches
Other package-manager records
Matches are pulled from external package-manager indexes and kept separate from local Automic Vault package links.
Debian apt95%
paml 4.9j+dfsg-6
Phylogenetic Analysis by Maximum Likelihood (PAML)
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml- Section: science
- Architecture: amd64
- 1 dependencies
- normalized package name match
- Matched by: Paml
Debian apt95%
paml-doc 4.9j+dfsg-6
Documentation for PAML
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml-doc- Section: doc
- Architecture: all
- Source Package: paml
- normalized package name match
- Matched by: Paml
Nix95%
paml
nix profile install nixpkgs#paml- normalized package name match
- Matched by: Paml
Ubuntu apt95%
paml 4.9j+dfsg-4
Phylogenetic Analysis by Maximum Likelihood (PAML)
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml- Section: universe/science
- Architecture: amd64
- 1 dependencies
- normalized package name match
- Matched by: Paml
Ubuntu apt95%
paml-doc 4.9j+dfsg-4
Documentation for PAML
http://abacus.gene.ucl.ac.uk/software/paml.html
sudo apt install paml-doc- Section: universe/doc
- Architecture: all
- Source Package: paml
- normalized package name match
- Matched by: Paml
Debian apt92%
evolver 2.70+ds-8
Surface Evolver
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver- Section: math
- Architecture: all
- 2 dependencies
- installed executable or alias match
- Matched by: Evolver
Debian apt92%
evolver-doc 2.70+ds-8
Surface Evolver - doc
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver-doc- Section: doc
- Architecture: all
- Source Package: evolver
- 2 optional deps
- installed executable or alias match
- Matched by: Evolver
Debian apt92%
evolver-nox 2.70+ds-8+b2
Surface Evolver - with no X support
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver-nox- Section: math
- Architecture: amd64
- Source Package: evolver
- 3 dependencies
- 1 provides
- 2 optional deps
- installed executable or alias match
- Matched by: Evolver
Debian apt92%
evolver-ogl 2.70+ds-8+b2
Surface Evolver - with OpenGL display
https://facstaff.susqu.edu/brakke/evolver/evolver.html
sudo apt install evolver-ogl- Section: math
- Architecture: amd64
- Source Package: evolver
- 7 dependencies
- 1 provides
- 2 optional deps
- installed executable or alias match
- Matched by: Evolver
source trail
Generated from repository data
This page is generated by av-web from the private package SQLite artifact built by scripts/generate-pkg-sqlite.py.
Combined YAML source
View the package source record on GitHub.
Used sources
- Geiger risk classifier
- cross-ecosystem install command graph
- external package-manager database matches
- pkg.so package database
- pkgdb category and tag curation