# snakemake を Homebrew, apt, Nix でインストール

snakemake のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:snakemake
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install snakemake
```

  証拠: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install snakemake
```

  証拠: Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- Nix (92%):

```sh
nix profile install nixpkgs#snakemake
```

  証拠: nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## パッケージ情報

- **パッケージキー:** brew:snakemake
- **パッケージマネージャ:** Homebrew
- **バージョン:** 9.24.0
- **ソース概要:** Pythonic workflow system
- **ホームページ:** <https://snakemake.readthedocs.io/>
- **リポジトリ:** <https://github.com/snakemake/snakemake>
- **最終更新:** 2026-07-31T14:26:29Z
- **生成日時:** 2026-08-03T19:37:03+00:00

## 実行可能ファイル

- snakemake (エイリアス)

## インストール挙動

- Bottle: 利用不可

## バージョンと鮮度

- ページ生成日: 2026-08-03
- マネージャ版: 9.24.0
## プロジェクトの歴史と使われ方

Snakemake is a Python-based workflow management system for reproducible and scalable data analyses, especially common in bioinformatics and scientific computing.

### プロジェクトの歴史

The official citation page identifies the initial Snakemake publication as a 2012 Bioinformatics article, followed by a 2021 rolling paper for ongoing feature updates. The official GitHub README describes Snakemake workflows as human-readable, Python-based definitions that scale from local machines to server, cluster, grid, and cloud environments.

### 採用の歴史

The official README reports that Snakemake was receiving more than seven new citations per week in 2021 and had almost 400k downloads at that time. The supplied metadata shows distribution through Homebrew, Debian, Ubuntu, Fedora/DNF, and Nix.

### 使われ方

Users describe workflows in Snakefiles, define rules, inputs, outputs, and software environments, and run snakemake to build requested targets. The official deployment docs recommend a repository layout with workflow code under workflow/ and configuration under config/, including config/config.yaml examples.

### パッケージ好きにとっての重要性

Snakemake is significant for package maintainers because it bridges language-level workflow definitions, reproducible software deployment, Conda/container integration, and distribution through multiple OS package managers.

### タイムライン

- 2012: Initial Snakemake paper published in Bioinformatics.
- 2019: Current official GitHub repository created.
- 2021: Sustainable data analysis with Snakemake rolling paper published.
- 2024: Snakemake 8 release line decomposes functionality into plugins.
- 2026: Stable documentation tracks Snakemake 9.x.

### Related projects

- Snakemake workflow catalog
- Snakemake wrappers
- Snakemake executor plugins
- Conda
- Apptainer

### ソース

- <https://api.github.com/repos/snakemake/snakemake>
- <https://github.com/snakemake/snakemake>
- <https://github.com/snakemake/snakemake/blob/main/docs/project_info/citations.rst>
- <https://github.com/snakemake/snakemake/blob/main/docs/snakefiles/deployment.rst>
- <https://snakemake.readthedocs.io/en/stable/project_info/history.html>
- input source_facts.package-manager


## セキュリティノート

snakemake に一致するローカルシークレット処理マニフェストは見つかりませんでした。将来の対応で安定したパッケージ URL を使えるよう、Nucleus パッケージメタデータはここに公開されています。



## Configuration and credential file locations

These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.


## Configuration files

- Unix: config/config.yaml
## 他のパッケージマネージャ記録

- Debian apt - snakemake - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | pythonic workflow management system | https://snakemake.readthedocs.io/
- Debian apt - snakemake-doc - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/
- Nix - snakemake: normalized package name match | nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - snakemake - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | pythonic workflow management system | https://snakemake.readthedocs.io/
- Ubuntu apt - snakemake-doc - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/


## Combined YAML source

View the package source record on GitHub. [combined/snakemake.yml](https://github.com/mxcl/pkgdb/blob/main/combined/snakemake.yml)


## ソース

- pkg.so package database
- Geiger risk classifier
- curated configuration and credential file locations
- curated package history
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph