# samtools を Homebrew, apt, dnf, MacPorts, Nix, zypper でインストール

samtools のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:samtools
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install samtools
```

  証拠: local Homebrew formula metadata

- MacPorts (94%):

```sh
sudo port install samtools
```

  証拠: MacPorts ports tree: science/samtools/Portfile from https://api.github.com/repos/macports/macports-ports/git/trees/master?recursive=1

### Linux

- Debian apt (92%):

```sh
sudo apt install samtools
```

  証拠: Debian stable package indexes: samtools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- dnf (92%):

```sh
sudo dnf install samtools
```

  証拠: Fedora Rawhide package metadata: samtools from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/07190dc5ae9f35ae73866675fed6d95fe6e8d9fe22c9d7cdf85862cb2ed24a4c-primary.xml.zst

- Nix (92%):

```sh
nix profile install nixpkgs#samtools
```

  証拠: nixpkgs package indexes: pkgs/by-name/sa/samtools/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

- zypper (92%):

```sh
sudo zypper install samtools
```

  証拠: openSUSE Tumbleweed package metadata: samtools from https://download.opensuse.org/tumbleweed/repo/oss/repodata/50b07339cb64c8ed4091bdbabddadc1ff5737b090e478818a195b40d8a3292861a879139b4a3987c31109699fde9fbf4a716367ddf4eef77da75f96e3193d6ed-primary.xml.zst

## パッケージ情報

- **パッケージキー:** brew:samtools
- **パッケージマネージャ:** Homebrew
- **バージョン:** 1.24
- **ソース概要:** Tools for manipulating next-generation sequencing data
- **ホームページ:** <https://www.htslib.org/>
- **リポジトリ:** <https://github.com/samtools/samtools>
- **最終更新:** 2026-07-09T19:51:46Z
- **生成日時:** 2026-08-03T19:37:03+00:00

## 実行可能ファイル

- ace2sam (エイリアス)
- blast2sam.pl (エイリアス)
- bowtie2sam.pl (エイリアス)
- export2sam.pl (エイリアス)
- fasta-sanitize.pl (エイリアス)
- interpolate_sam.pl (エイリアス)
- maq2sam-long (エイリアス)
- maq2sam-short (エイリアス)
- md5fa (エイリアス)
- md5sum-lite (エイリアス)
- novo2sam.pl (エイリアス)
- plot-ampliconstats (エイリアス)
- plot-bamstats (エイリアス)
- psl2sam.pl (エイリアス)
- sam2vcf.pl (エイリアス)
- samtools (エイリアス)
- samtools.pl (エイリアス)
- seq_cache_populate.pl (エイリアス)
- seq_cache_populate.py (エイリアス)
- soap2sam.pl (エイリアス)
- wgsim (エイリアス)
- wgsim_eval.pl (エイリアス)
- zoom2sam.pl (エイリアス)

## インストール挙動

- Bottle: 利用不可

## バージョンと鮮度

- ページ生成日: 2026-08-03
- マネージャ版: 1.24

## セキュリティノート

narrow executable package without higher-risk signals.

- **Geiger リスク:** グリーン / 低
- narrow executable package without higher-risk signals

## 他のパッケージマネージャ記録

- Debian apt - samtools - 1.21-1: normalized package name match | Debian stable package indexes: samtools from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | processing sequence alignments in SAM, BAM and CRAM formats | https://www.htslib.org/
- Debian apt - samtools-test - 1.21-1: normalized package name match | Debian stable package indexes: samtools-test from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | test files for the samtools package | https://www.htslib.org/
- Nix - samtools: normalized package name match | nixpkgs package indexes: pkgs/by-name/sa/samtools/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - samtools - 1.19.2-1build2: normalized package name match | Ubuntu 24.04 LTS package indexes: samtools from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | processing sequence alignments in SAM, BAM and CRAM formats | https://www.htslib.org/
- Ubuntu apt - samtools-test - 1.19.2-1build2: normalized package name match | Ubuntu 24.04 LTS package indexes: samtools-test from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | test files for the samtools package | https://www.htslib.org/
- dnf - samtools - 1.24-2.fc45: normalized package name match | Fedora Rawhide package metadata: samtools from https://dl.fedoraproject.org/pub/fedora/linux/development/rawhide/Everything/x86_64/os/repodata/07190dc5ae9f35ae73866675fed6d95fe6e8d9fe22c9d7cdf85862cb2ed24a4c-primary.xml.zst | Tools for nucleotide sequence alignments in the SAM format | http://www.htslib.org/
- zypper - samtools - 1.21-1.5: normalized package name match | openSUSE Tumbleweed package metadata: samtools from https://download.opensuse.org/tumbleweed/repo/oss/repodata/50b07339cb64c8ed4091bdbabddadc1ff5737b090e478818a195b40d8a3292861a879139b4a3987c31109699fde9fbf4a716367ddf4eef77da75f96e3193d6ed-primary.xml.zst | Tools for manipulating next-generation sequencing data | https://github.com/samtools/samtools
- MacPorts - samtools: normalized package name match | MacPorts ports tree: science/samtools/Portfile from https://api.github.com/repos/macports/macports-ports/git/trees/master?recursive=1


## Combined YAML source

View the package source record on GitHub. [combined/samtools.yml](https://github.com/mxcl/pkgdb/blob/main/combined/samtools.yml)


## ソース

- pkg.so package database
- Geiger risk classifier
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph