# diamond を Homebrew, Nix でインストール

diamond のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。

## インストール

```sh
sudo av install brew:diamond
```

追加のインストールコマンド:

### macOS

- Homebrew (100%):

```sh
brew install diamond
```

  証拠: local Homebrew formula metadata

### Linux

- Nix (92%):

```sh
nix profile install nixpkgs#diamond
```

  証拠: nixpkgs package indexes: pkgs/by-name/di/diamond/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## パッケージ情報

- **パッケージキー:** brew:diamond
- **パッケージマネージャ:** Homebrew
- **バージョン:** 2.2.4
- **ソース概要:** Accelerated BLAST compatible local sequence aligner
- **ホームページ:** <https://github.com/bbuchfink/diamond>
- **リポジトリ:** <https://github.com/bbuchfink/diamond>
- **最終更新:** 2026-07-13T15:30:35Z
- **生成日時:** 2026-08-03T19:37:03+00:00

## 実行可能ファイル

- diamond (エイリアス)

## インストール挙動

- Bottle: 利用不可

## バージョンと鮮度

- ページ生成日: 2026-08-03
- マネージャ版: 2.2.4
## プロジェクトの歴史と使われ方

DIAMOND is a high-performance sequence aligner for protein and translated DNA searches, positioned as a BLAST-compatible tool for large biological datasets.

### プロジェクトの歴史

The README says the initial version was developed by Benjamin J. Buchfink at the Huson lab, University of Tuebingen, from 2013 to 2015. Later development continued independently, with support from an EXIST grant in 2018-2019 and the Max Planck Institute for Biology Tuebingen from 2019 to 2024.

### 採用の歴史

DIAMOND's adoption is tied to its promise of much faster BLAST-like protein and translated DNA alignment. The README highlights 100x to 10,000x BLAST speed, low resource requirements, downloads from GitHub releases, Bioconda availability, Galaxy integration, and citation badges.

### 使われ方

Package users install DIAMOND when they need command-line database creation, protein search, translated DNA search, sequence clustering, taxonomic classification, or BLAST-style tabular, pairwise, and XML outputs.

### パッケージ好きにとっての重要性

DIAMOND is significant because it is a research-grade bioinformatics workhorse that also behaves like a normal packaged CLI. That combination makes it common in reproducible pipelines, containers, Conda environments, Homebrew installs, and HPC workflows.

### タイムライン

- 2013-2015: Initial version developed at the Huson lab, University of Tuebingen.
- 2015: Original DIAMOND publication cited in the README.
- 2021: Sensitive protein alignments at tree-of-life scale publication cited in the README.
- 2026: v2.2.2 release published on GitHub.

### Related projects

- The README frames DIAMOND as BLAST-compatible and links it to Bioconda and the European Galaxy server for workflow use.

### ソース

- <https://github.com/bbuchfink/diamond>
- <https://raw.githubusercontent.com/bbuchfink/diamond/master/README.md>
- <https://api.github.com/repos/bbuchfink/diamond>
- <https://github.com/bbuchfink/diamond/releases/tag/v2.2.2>


## セキュリティノート

diamond に一致するローカルシークレット処理マニフェストは見つかりませんでした。将来の対応で安定したパッケージ URL を使えるよう、Nucleus パッケージメタデータはここに公開されています。


## 他のパッケージマネージャ記録

- Nix - diamond: normalized package name match | nixpkgs package indexes: pkgs/by-name/di/diamond/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1


## Combined YAML source

View the package source record on GitHub. [combined/diamond.yml](https://github.com/mxcl/pkgdb/blob/main/combined/diamond.yml)


## ソース

- pkg.so package database
- Geiger risk classifier
- curated package history
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph