# snakemake を Homebrew, apt, Nix でインストール snakemake のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。 ## インストール ```sh sudo av install brew:snakemake ``` 追加のインストールコマンド: ### macOS - Homebrew (100%): ```sh brew install snakemake ``` 証拠: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install snakemake ``` 証拠: Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz - Nix (92%): ```sh nix profile install nixpkgs#snakemake ``` 証拠: nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 ## パッケージ情報 - **パッケージキー:** brew:snakemake - **パッケージマネージャ:** Homebrew - **パッケージマネージャページ:** - **バージョン:** 9.24.0 - **ソース概要:** Pythonic workflow system - **ホームページ:** - **リポジトリ:** - **上流ドキュメント:** - **ライセンス:** MIT - **ソースアーカイブ:** - **最終更新:** 2026-07-31T14:26:29Z - **生成日時:** 2026-08-04T22:13:35+00:00 ## 実行可能ファイル - snakemake (cli) - snakemake (エイリアス) ## 依存関係 - cbc - certifi - libyaml - pydantic - python@3.14 - rpds-py ## ビルド依存関係 - rust ## インストール挙動 - post-install フック: 未定義 - Bottle: 利用可能 対象 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## バージョンと鮮度 - ページ生成日: 2026-08-04 - マネージャ版: 9.24.0 - マネージャ更新日: 2026-07-31 - ローカルデータ: OK - 上流リポジトリ: https://snakemake.readthedocs.io/ - 情報: Release/tag comparison is only available for GitHub repositories. ## プロジェクトの歴史と使われ方 Snakemake is a Python-based workflow management system for reproducible and scalable data analyses, especially common in bioinformatics and scientific computing. ### プロジェクトの歴史 The official citation page identifies the initial Snakemake publication as a 2012 Bioinformatics article, followed by a 2021 rolling paper for ongoing feature updates. The official GitHub README describes Snakemake workflows as human-readable, Python-based definitions that scale from local machines to server, cluster, grid, and cloud environments. ### 採用の歴史 The official README reports that Snakemake was receiving more than seven new citations per week in 2021 and had almost 400k downloads at that time. The supplied metadata shows distribution through Homebrew, Debian, Ubuntu, Fedora/DNF, and Nix. ### 使われ方 Users describe workflows in Snakefiles, define rules, inputs, outputs, and software environments, and run snakemake to build requested targets. The official deployment docs recommend a repository layout with workflow code under workflow/ and configuration under config/, including config/config.yaml examples. ### パッケージ好きにとっての重要性 Snakemake is significant for package maintainers because it bridges language-level workflow definitions, reproducible software deployment, Conda/container integration, and distribution through multiple OS package managers. ### タイムライン - 2012: Initial Snakemake paper published in Bioinformatics. - 2019: Current official GitHub repository created. - 2021: Sustainable data analysis with Snakemake rolling paper published. - 2024: Snakemake 8 release line decomposes functionality into plugins. - 2026: Stable documentation tracks Snakemake 9.x. ### Related projects - Snakemake workflow catalog - Snakemake wrappers - Snakemake executor plugins - Conda - Apptainer ### ソース - - - - - - input source_facts.package-manager ## セキュリティノート snakemake に一致するローカルシークレット処理マニフェストは見つかりませんでした。将来の対応で安定したパッケージ URL を使えるよう、パッケージメタデータはここに公開されています。 ## Configuration and credential file locations These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval. ## Configuration files - Unix: config/config.yaml ## ソースデータベース詳細 - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** snakemake - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## 他のパッケージマネージャ記録 - Debian apt - snakemake - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | pythonic workflow management system | https://snakemake.readthedocs.io/ - Debian apt - snakemake-doc - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/ - Nix - snakemake: normalized package name match | nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 - Ubuntu apt - snakemake - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | pythonic workflow management system | https://snakemake.readthedocs.io/ - Ubuntu apt - snakemake-doc - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/ ## 関連リンク - [Terminal utility packages](https://pkg.so/ja/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Language runtime packages](https://pkg.so/ja/language-runtime-packages/) - Matched language runtime, compiler, or interpreter metadata. - [Networking and protocol packages](https://pkg.so/ja/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Database and data packages](https://pkg.so/ja/database-data-tools/) - Matched database, SQL, migration, or data-store metadata. - [python@3.14](https://pkg.so/ja/brew/python-3-14/) - Runtime dependency declared by Homebrew. - [cbc](https://pkg.so/ja/brew/cbc/) - Runtime dependency declared by Homebrew. - [rust](https://pkg.so/ja/brew/rust/) - Build dependency declared by Homebrew. - [cromwell](https://pkg.so/ja/brew/cromwell/) - Shares pkgdb curated category or tags: bioinformatics, cli, science, workflow-management. - [btllib](https://pkg.so/ja/brew/btllib/) - Shares pkgdb curated category or tags: bioinformatics, cli, python, science. - [cutadapt](https://pkg.so/ja/brew/cutadapt/) - Shares pkgdb curated category or tags: bioinformatics, cli, python, science. - [numpy](https://pkg.so/ja/brew/numpy/) - Shares pkgdb curated category or tags: cli, python, science. - [jupyterlab](https://pkg.so/ja/brew/jupyterlab/) - Shares pkgdb curated category or tags: cli, python, science. - [root](https://pkg.so/ja/brew/root/) - Shares pkgdb curated category or tags: cli, data-analysis, science. - [samtools](https://pkg.so/ja/brew/samtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, science. - [htslib](https://pkg.so/ja/brew/htslib/) - Shares pkgdb curated category or tags: bioinformatics, cli, science. ## Combined YAML source View the package source record on GitHub. [combined/snakemake.yml](https://github.com/mxcl/pkgdb/blob/main/combined/snakemake.yml) ## ソース - pkg.so package database - Geiger risk classifier - package-page enrichment - curated configuration and credential file locations - curated package history - package version freshness - pkgdb category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph