# abricate を Homebrew でインストール abricate のインストール経路、実行ファイル、メタデータ、AI エージェント向けセキュリティノートを確認します。 ## インストール ```sh sudo av install brew:abricate ``` 追加のインストールコマンド: ### macOS - Homebrew (100%): ```sh brew install abricate ``` 証拠: local Homebrew formula metadata ## パッケージ情報 - **パッケージキー:** brew:abricate - **パッケージマネージャ:** Homebrew - **パッケージマネージャページ:** - **バージョン:** 1.4.0 - **ソース概要:** Find antimicrobial resistance and virulence genes in contigs - **ホームページ:** - **リポジトリ:** - **ライセンス:** GPL-2.0-only - **ソースアーカイブ:** - **最終更新:** 2026-07-29T17:23:23+01:00 - **生成日時:** 2026-08-04T22:13:35+00:00 ## 実行可能ファイル - abricate (cli) - abricate-get_db (cli) - abricate (エイリアス) - abricate-get_db (エイリアス) ## 依存関係 - any2fasta - bioperl - blast ## macOS 提供ライブラリ - perl - unzip ## インストール挙動 - post-install フック: 未定義 - Bottle: 利用可能 対象 arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## バージョンと鮮度 - ページ生成日: 2026-08-04 - マネージャ版: 1.4.0 - マネージャ更新日: 2026-07-29 - ローカルデータ: OK - 上流リポジトリ: https://github.com/tseemann/abricate - 検出された最新: v1.4.0 (最新) ## プロジェクトの歴史と使われ方 ABRicate is a Perl command-line tool for mass screening assembled contigs against antimicrobial-resistance and virulence-gene databases. It matters to package maintainers because it wraps BLAST+, database setup, and summary reporting into a familiar Unix bioinformatics command. ### プロジェクトの歴史 The first GitHub release, v0.1, was published as 'Debut' on April 2, 2015. The README describes the project as mass screening of contigs for antimicrobial resistance or virulence genes and explains that the name combines the common acronym ABR, for antibiotic resistance, with an English-verb-like form. ### 採用の歴史 ABRicate became useful in workflow packaging because the README documents Bioconda installation, source installation, dependency checks, database setup, and operation through a single abricate command. The current Homebrew input metadata shows it packaged for Homebrew, while upstream also advertises Bioconda download badges. ### 使われ方 The tool screens assemblies, not raw FASTQ reads, and reports gene hits with coverage, identity, database, accession, product, and resistance fields. It can process many files, read a file-of-filenames, summarize reports into a presence/absence matrix, update bundled databases, and build custom nucleotide databases. ### パッケージ好きにとっての重要性 ABRicate is a classic bioinformatics packaging target: a Perl entry point with external command dependencies, bundled or downloadable reference databases, and a check/setup workflow that packagers and workflow engines can exercise after install. Its release history also tracks database refreshes and CI migration. ### タイムライン - 2015: v0.1 Debut release. - 2020: v1.0.0 added file-of-filenames scanning, defaults around coverage/identity thresholds, MEGARES docs, and NCBI/CARD database support. - 2025: v1.2.0 refreshed databases, moved CI to GitHub Actions, switched download code to Perl File::Fetch, and improved docs. - 2026: v1.4.0 added a UPEC/ExPEC virulence-factors database and updated NCBI AMR data. ### Related projects - The README points users to ARIBA, ResFinder, RGI, SRST2, and AMRFinderPlus when ABRicate is not the right fit. It also bundles or references databases including NCBI AMRFinderPlus, CARD, ResFinder, ARG-ANNOT, MEGARES, PlasmidFinder, VFDB, VICTORS, BacMet, and UPEC/ExPEC VF. ### ソース - - - input source_facts.package-manager ## セキュリティノート narrow executable package without higher-risk signals. - **Geiger リスク:** グリーン / 低 - narrow executable package without higher-risk signals ## ソースデータベース詳細 - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** abricate - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## 関連リンク - [Source-control packages](https://pkg.so/ja/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://pkg.so/ja/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://pkg.so/ja/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://pkg.so/ja/scientific-computing-tools/) - Matched scientific computing metadata. - [blast](https://pkg.so/ja/brew/blast/) - Runtime dependency declared by Homebrew. - [bioperl](https://pkg.so/ja/brew/bioperl/) - Runtime dependency declared by Homebrew. - [any2fasta](https://pkg.so/ja/brew/any2fasta/) - Runtime dependency declared by Homebrew. - [samtools](https://pkg.so/ja/brew/samtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [bedtools](https://pkg.so/ja/brew/bedtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [minimap2](https://pkg.so/ja/brew/minimap2/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [bbtools](https://pkg.so/ja/brew/bbtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [sambamba](https://pkg.so/ja/brew/sambamba/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [picard-tools](https://pkg.so/ja/brew/picard-tools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [bamtools](https://pkg.so/ja/brew/bamtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [skani](https://pkg.so/ja/brew/skani/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, contigs, genomics, science. ## Combined YAML source View the package source record on GitHub. [combined/abricate.yml](https://github.com/mxcl/pkgdb/blob/main/combined/abricate.yml) ## ソース - pkg.so package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - pkgdb category and tag curation - package relationship graph - cross-ecosystem install command graph