# Installer bedtk avec Homebrew

Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de bedtk pour les workflows d'agents IA.

## installation

```sh
sudo av install brew:bedtk
```

Commandes d'installation supplémentaires:

### macOS

- Homebrew (100%):

```sh
brew install bedtk
```

  Preuve: local Homebrew formula metadata

## Faits du paquet

- **Clé du paquet:** brew:bedtk
- **Gestionnaire de paquets:** Homebrew
- **Version:** 1.2
- **Résumé source:** Simple toolset for BED files
- **Page d'accueil:** <https://github.com/lh3/bedtk>
- **Dépôt:** <https://github.com/lh3/bedtk>
- **Généré:** 2026-08-03T19:37:03+00:00

## exécutables

- bedtk (alias)

## Comportement d'installation

- Bouteille: non disponible

## Version et fraîcheur

- page générée: 2026-08-03
- version du gestionnaire: 1.2
## Historique du projet et usages

bedtk is Heng Li's compact command-line toolkit for BED files, focused on fast interval overlap operations with a smaller scope than bedtools.

### Historique du projet

The bedtk repository was created in October 2019, with the first visible commit adding interval intersection. Its README describes a simple BED toolset implementing intersection, subtraction, sorting, merging, and breadth-of-coverage calculations.

The project is tied to the 2021 Bioinformatics article 'Bedtk: finding interval overlap with implicit interval tree,' which explains its algorithmic focus. Upstream releases reached v1.0 in April 2025 and v1.2 in August 2025.

### Historique d'adoption

The supplied package metadata lists Homebrew packaging. Upstream positions bedtk as a narrow, performance-oriented companion rather than a complete bedtools replacement.

### Modes d'utilisation

bedtk is used for operations such as filtering overlapping or non-overlapping BED/VCF records, intersection without pre-sorting, coverage breadth, sorting, and merging.

### Pourquoi les passionnés de paquets s'y intéressent

bedtk is notable because it comes from the lh3 bioinformatics tool lineage and deliberately keeps the surface area small. It is the kind of package a genomics CLI user installs when they care about speed and memory more than a broad command catalog.

### Chronologie

- 2019: Repository created and initial intersection work committed.
- 2021: bedtk paper published in Bioinformatics.
- 2025: v1.0, v1.1, and v1.2 releases published.

### Related projects

- bedtools is explicitly named by upstream as broader and more versatile.
- cgranges is linked from the README and is related to the interval-overlap implementation family.

### Sources

- <https://api.github.com/repos/lh3/bedtk>
- <https://github.com/lh3/bedtk#readme>
- <https://github.com/lh3/bedtk/releases>
- source_facts.package-manager


## Notes de sécurité

narrow executable package without higher-risk signals.

- **Risque Geiger:** vert / faible
- narrow executable package without higher-risk signals


## Combined YAML source

View the package source record on GitHub. [combined/bedtk.yml](https://github.com/mxcl/pkgdb/blob/main/combined/bedtk.yml)


## Sources

- pkg.so package database
- Geiger risk classifier
- curated package history
- pkgdb category and tag curation
- cross-ecosystem install command graph