# Installer snakemake avec Homebrew, apt, Nix Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de snakemake pour les workflows d'agents IA. ## installation ```sh sudo av install brew:snakemake ``` Commandes d'installation supplémentaires: ### macOS - Homebrew (100%): ```sh brew install snakemake ``` Preuve: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install snakemake ``` Preuve: Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz - Nix (92%): ```sh nix profile install nixpkgs#snakemake ``` Preuve: nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 ## Faits du paquet - **Clé du paquet:** brew:snakemake - **Gestionnaire de paquets:** Homebrew - **Page du gestionnaire de paquets:** - **Version:** 9.24.0 - **Résumé source:** Pythonic workflow system - **Page d'accueil:** - **Dépôt:** - **Docs amont:** - **Licence:** MIT - **Archive source:** - **Dernière mise à jour:** 2026-07-31T14:26:29Z - **Généré:** 2026-08-04T22:13:35+00:00 ## exécutables - snakemake (cli) - snakemake (alias) ## Dépendances - cbc - certifi - libyaml - pydantic - python@3.14 - rpds-py ## Dépendances de compilation - rust ## Comportement d'installation - hook post-installation: non défini - Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version et fraîcheur - page générée: 2026-08-04 - version du gestionnaire: 9.24.0 - gestionnaire mis à jour: 2026-07-31 - données locales: OK - dépôt amont: https://snakemake.readthedocs.io/ - info: Release/tag comparison is only available for GitHub repositories. ## Historique du projet et usages Snakemake is a Python-based workflow management system for reproducible and scalable data analyses, especially common in bioinformatics and scientific computing. ### Historique du projet The official citation page identifies the initial Snakemake publication as a 2012 Bioinformatics article, followed by a 2021 rolling paper for ongoing feature updates. The official GitHub README describes Snakemake workflows as human-readable, Python-based definitions that scale from local machines to server, cluster, grid, and cloud environments. ### Historique d'adoption The official README reports that Snakemake was receiving more than seven new citations per week in 2021 and had almost 400k downloads at that time. The supplied metadata shows distribution through Homebrew, Debian, Ubuntu, Fedora/DNF, and Nix. ### Modes d'utilisation Users describe workflows in Snakefiles, define rules, inputs, outputs, and software environments, and run snakemake to build requested targets. The official deployment docs recommend a repository layout with workflow code under workflow/ and configuration under config/, including config/config.yaml examples. ### Pourquoi les passionnés de paquets s'y intéressent Snakemake is significant for package maintainers because it bridges language-level workflow definitions, reproducible software deployment, Conda/container integration, and distribution through multiple OS package managers. ### Chronologie - 2012: Initial Snakemake paper published in Bioinformatics. - 2019: Current official GitHub repository created. - 2021: Sustainable data analysis with Snakemake rolling paper published. - 2024: Snakemake 8 release line decomposes functionality into plugins. - 2026: Stable documentation tracks Snakemake 9.x. ### Related projects - Snakemake workflow catalog - Snakemake wrappers - Snakemake executor plugins - Conda - Apptainer ### Sources - - - - - - input source_facts.package-manager ## Notes de sécurité Aucun manifest local de gestion des secrets correspondant n'a été trouvé pour snakemake. Les métadonnées de paquet restent publiées ici afin que la couverture future dispose d'une URL stable. ## Configuration and credential file locations These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval. ## Configuration files - Unix: config/config.yaml ## Détails de la base source - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** snakemake - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## Autres enregistrements de gestionnaires de paquets - Debian apt - snakemake - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | pythonic workflow management system | https://snakemake.readthedocs.io/ - Debian apt - snakemake-doc - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/ - Nix - snakemake: normalized package name match | nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 - Ubuntu apt - snakemake - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | pythonic workflow management system | https://snakemake.readthedocs.io/ - Ubuntu apt - snakemake-doc - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/ ## Liens liés - [Terminal utility packages](https://pkg.so/fr/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Language runtime packages](https://pkg.so/fr/language-runtime-packages/) - Matched language runtime, compiler, or interpreter metadata. - [Networking and protocol packages](https://pkg.so/fr/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Database and data packages](https://pkg.so/fr/database-data-tools/) - Matched database, SQL, migration, or data-store metadata. - [python@3.14](https://pkg.so/fr/brew/python-3-14/) - Runtime dependency declared by Homebrew. - [cbc](https://pkg.so/fr/brew/cbc/) - Runtime dependency declared by Homebrew. - [rust](https://pkg.so/fr/brew/rust/) - Build dependency declared by Homebrew. - [cromwell](https://pkg.so/fr/brew/cromwell/) - Shares pkgdb curated category or tags: bioinformatics, cli, science, workflow-management. - [btllib](https://pkg.so/fr/brew/btllib/) - Shares pkgdb curated category or tags: bioinformatics, cli, python, science. - [cutadapt](https://pkg.so/fr/brew/cutadapt/) - Shares pkgdb curated category or tags: bioinformatics, cli, python, science. - [numpy](https://pkg.so/fr/brew/numpy/) - Shares pkgdb curated category or tags: cli, python, science. - [jupyterlab](https://pkg.so/fr/brew/jupyterlab/) - Shares pkgdb curated category or tags: cli, python, science. - [root](https://pkg.so/fr/brew/root/) - Shares pkgdb curated category or tags: cli, data-analysis, science. - [samtools](https://pkg.so/fr/brew/samtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, science. - [htslib](https://pkg.so/fr/brew/htslib/) - Shares pkgdb curated category or tags: bioinformatics, cli, science. ## Combined YAML source View the package source record on GitHub. [combined/snakemake.yml](https://github.com/mxcl/pkgdb/blob/main/combined/snakemake.yml) ## Sources - pkg.so package database - Geiger risk classifier - package-page enrichment - curated configuration and credential file locations - curated package history - package version freshness - pkgdb category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph