# Installer minibwa avec Homebrew

Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de minibwa pour les workflows d'agents IA.

## installation

```sh
sudo av install brew:minibwa
```

Commandes d'installation supplémentaires:

### macOS

- Homebrew (100%):

```sh
brew install minibwa
```

  Preuve: local Homebrew formula metadata

## Faits du paquet

- **Clé du paquet:** brew:minibwa
- **Gestionnaire de paquets:** Homebrew
- **Page du gestionnaire de paquets:** <https://formulae.brew.sh/formula/minibwa>
- **Version:** 0.6
- **Résumé source:** Successor of BWA-MEM for short-read alignment
- **Page d'accueil:** <https://github.com/lh3/minibwa>
- **Dépôt:** <https://github.com/lh3/minibwa>
- **Licence:** MIT AND Apache-2.0
- **Archive source:** <https://github.com/lh3/minibwa/archive/refs/tags/v0.6.tar.gz>
- **Dernière mise à jour:** 2026-07-30T15:48:22Z
- **Généré:** 2026-08-04T22:13:35+00:00

## exécutables

- minibwa (cli)
- minibwa (alias)

## Comportement d'installation

- hook post-installation: non défini
- Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## Version et fraîcheur

- page générée: 2026-08-04
- version du gestionnaire: 0.6
- gestionnaire mis à jour: 2026-07-30
- données locales: OK
- dépôt amont: https://github.com/lh3/minibwa
- dernière version détectée: v0.6 (à jour)
## Historique du projet et usages

minibwa is a genomic read aligner from the BWA/minimap2 lineage. The repository identifies it as the successor of BWA-MEM for short-read alignment, and the arXiv preprint by Heng Li and Nils Homer presents it as a next iteration of BWA-MEM for standard whole-genome short reads, Hi-C reads, accurate long reads, and directional bisulfite sequencing data.

### Historique du projet

The design deliberately mixes earlier tools by the same lineage: a BWA-MEM-style BWT/FM-index and variable-length seed search, ropebwt3-inspired supermaximal exact-match work, and minimap2-style chaining plus SIMD-based base alignment. The authors report comparable accuracy with much higher speed than BWA-MEM and BWA-MEM2, while noting that exact BWA-MEM compatibility is traded for algorithmic improvement.

### Modes d'utilisation

In practice, minibwa is a bioinformatics command-line aligner for pipelines that map sequencing reads to a reference genome before variant calling, methylation analysis, or related downstream analysis. Its package-manager niche is narrow but important: it gives genomics users an installable replacement candidate for BWA-MEM where performance and support for newer read types matter more than byte-for-byte legacy output.

### Sources

- <https://arxiv.org/abs/2606.15357>
- <https://arxiv.org/html/2606.15357v1>
- <https://github.com/lh3/bwa>
- <https://github.com/lh3/minibwa>


## Notes de sécurité

Aucun manifest local de gestion des secrets correspondant n'a été trouvé pour minibwa. Les métadonnées de paquet restent publiées ici afin que la couverture future dispose d'une URL stable.


## Détails de la base source

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** minibwa
- **Version Scheme:** 0
- **Revision:** 0
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** stable


## Liens liés

- [Source-control packages](https://pkg.so/fr/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://pkg.so/fr/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://pkg.so/fr/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://pkg.so/fr/scientific-computing-tools/) - Matched scientific computing metadata.
- [blast](https://pkg.so/fr/brew/blast/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science, sequence-alignment.
- [minimap2](https://pkg.so/fr/brew/minimap2/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science, sequence-alignment.
- [mummer](https://pkg.so/fr/brew/mummer/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science, sequence-alignment.
- [lastz](https://pkg.so/fr/brew/lastz/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science, sequence-alignment.
- [samtools](https://pkg.so/fr/brew/samtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [diamond](https://pkg.so/fr/brew/diamond/) - Shares pkgdb curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [bedtools](https://pkg.so/fr/brew/bedtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [mafft](https://pkg.so/fr/brew/mafft/) - Shares pkgdb curated category or tags: bioinformatics, cli, science, sequence-alignment.
- [bwa](https://pkg.so/fr/brew/bwa/) - Local package facts share a topical domain. Shared terms: alignment, bioinformatics, bwa, cli, science.
- [polypolish](https://pkg.so/fr/brew/polypolish/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, genomics, read, science.

## Combined YAML source

View the package source record on GitHub. [combined/minibwa.yml](https://github.com/mxcl/pkgdb/blob/main/combined/minibwa.yml)


## Sources

- pkg.so package database
- package-page enrichment
- curated package history
- package version freshness
- pkgdb category and tag curation
- package relationship graph
- cross-ecosystem install command graph