# Installer adapterremoval avec Homebrew, apt Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de adapterremoval pour les workflows d'agents IA. ## installation ```sh sudo av install brew:adapterremoval ``` Commandes d'installation supplémentaires: ### macOS - Homebrew (100%): ```sh brew install adapterremoval ``` Preuve: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install adapterremoval ``` Preuve: Debian stable package indexes: adapterremoval from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz ## Faits du paquet - **Clé du paquet:** brew:adapterremoval - **Gestionnaire de paquets:** Homebrew - **Page du gestionnaire de paquets:** - **Version:** 3.0.1 - **Résumé source:** Rapid adapter trimming, identification, and read merging - **Page d'accueil:** - **Dépôt:** - **Licence:** GPL-3.0-or-later - **Archive source:** - **Dernière mise à jour:** 2026-08-02T00:19:40+09:00 - **Généré:** 2026-08-04T22:13:35+00:00 ## exécutables - adapterremoval3 (cli) - adapterremoval3 (alias) ## Dépendances - isa-l - libdeflate ## Dépendances de compilation - meson - ninja - pkgconf - sphinx-doc ## Comportement d'installation - hook post-installation: non défini - Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version et fraîcheur - page générée: 2026-08-04 - version du gestionnaire: 3.0.1 - gestionnaire mis à jour: 2026-08-02 - données locales: OK - dépôt amont: https://github.com/MikkelSchubert/adapterremoval - dernière version détectée: v3.0.1 (à jour) ## Historique du projet et usages AdapterRemoval is a bioinformatics command-line tool for trimming adapter sequences, trimming low-quality bases, merging overlapping paired-end reads, demultiplexing barcoded reads, and producing sequencing QC reports. ### Historique du projet The README cites the original AdapterRemoval publication by Lindgreen in 2012 and the AdapterRemoval v2 paper by Schubert, Lindgreen, and Orlando in 2016. Version 3 is described as a major revision of version 2 focused on simpler defaults, more features, and higher throughput. The GitHub repository was created in 2014 and now publishes the `adapterremoval3` command with documentation hosted on Read the Docs. ### Historique d'adoption AdapterRemoval became a common sequencing utility because adapter trimming and read merging are routine preprocessing steps for high-throughput sequencing FASTQ data. Its README notes precompiled binaries for Linux, macOS, and Windows, and the supplied input lists Homebrew, Debian, and Ubuntu packages. ### Modes d'utilisation Users run `adapterremoval3` with input FASTQ files and an output prefix; default behavior can automatically detect adapters, trim low-quality bases, filter reads, write compressed FASTQ, and generate HTML and JSON reports. ### Pourquoi les passionnés de paquets s'y intéressent For package maintainers, AdapterRemoval is a good example of a scientific CLI where reproducibility, CPU-specific acceleration, compression libraries, and manpage/docs installation all matter. Version 3 adds SIMD acceleration and broader platform packaging concerns. ### Chronologie - 2012: Original AdapterRemoval publication appeared in BMC Research Notes. - 2014: GitHub repository `MikkelSchubert/adapterremoval` was created. - 2016: AdapterRemoval v2 paper described rapid adapter trimming, identification, and read merging. - 2022: First AdapterRemoval v3 alpha release was published. - 2026: AdapterRemoval v3.0.0 was published. ### Related projects - Related tools and domains include FASTQ preprocessing pipelines, adapter trimming utilities, Illumina sequencing workflows, SAM/BAM output handling, and QC report generators. ### Sources - - - ## Notes de sécurité Aucun manifest local de gestion des secrets correspondant n'a été trouvé pour adapterremoval. Les métadonnées de paquet restent publiées ici afin que la couverture future dispose d'une URL stable. ## Détails de la base source - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** adapterremoval - **Version Scheme:** 0 - **Revision:** 0 - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** stable ## Autres enregistrements de gestionnaires de paquets - Debian apt - adapterremoval - 2.3.4-1: normalized package name match | Debian stable package indexes: adapterremoval from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | rapid adapter trimming, identification, and read merging of gene sequences | https://github.com/MikkelSchubert/adapterremoval - Debian apt - adapterremoval-examples - 2.3.4-1: normalized package name match | Debian stable package indexes: adapterremoval-examples from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | rapid adapter trimming, identification, and read merging (example data) | https://github.com/MikkelSchubert/adapterremoval - Ubuntu apt - adapterremoval - 2.3.3-2: normalized package name match | Ubuntu 24.04 LTS package indexes: adapterremoval from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | rapid adapter trimming, identification, and read merging of gene sequences | https://github.com/MikkelSchubert/adapterremoval - Ubuntu apt - adapterremoval-examples - 2.3.3-2: normalized package name match | Ubuntu 24.04 LTS package indexes: adapterremoval-examples from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | rapid adapter trimming, identification, and read merging (example data) | https://github.com/MikkelSchubert/adapterremoval ## Liens liés - [Source-control packages](https://pkg.so/fr/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://pkg.so/fr/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://pkg.so/fr/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://pkg.so/fr/scientific-computing-tools/) - Matched scientific computing metadata. - [libdeflate](https://pkg.so/fr/brew/libdeflate/) - Runtime dependency declared by Homebrew. - [pkgconf](https://pkg.so/fr/brew/pkgconf/) - Build dependency declared by Homebrew. - [ninja](https://pkg.so/fr/brew/ninja/) - Build dependency declared by Homebrew. - [meson](https://pkg.so/fr/brew/meson/) - Build dependency declared by Homebrew. - [sphinx-doc](https://pkg.so/fr/brew/sphinx-doc/) - Build dependency declared by Homebrew. - [trim-galore](https://pkg.so/fr/brew/trim-galore/) - Shares pkgdb curated category or tags: adapter-trimming, bioinformatics, cli, fastq, science. - [fastqc](https://pkg.so/fr/brew/fastqc/) - Shares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing. - [fastp](https://pkg.so/fr/brew/fastp/) - Shares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing. - [rasusa](https://pkg.so/fr/brew/rasusa/) - Shares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing. - [cutadapt](https://pkg.so/fr/brew/cutadapt/) - Shares pkgdb curated category or tags: adapter-trimming, bioinformatics, cli, science, sequencing. - [fastq-tools](https://pkg.so/fr/brew/fastq-tools/) - Shares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing. - [sickle](https://pkg.so/fr/brew/sickle/) - Shares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing. - [nanoq](https://pkg.so/fr/brew/nanoq/) - Shares pkgdb curated category or tags: bioinformatics, cli, fastq, science, sequencing. ## Combined YAML source View the package source record on GitHub. [combined/adapterremoval.yml](https://github.com/mxcl/pkgdb/blob/main/combined/adapterremoval.yml) ## Sources - pkg.so package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - pkgdb category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph