# Installer abricate avec Homebrew

Consultez les chemins d'installation, exécutables, métadonnées et notes de sécurité de abricate pour les workflows d'agents IA.

## installation

```sh
sudo av install brew:abricate
```

Commandes d'installation supplémentaires:

### macOS

- Homebrew (100%):

```sh
brew install abricate
```

  Preuve: local Homebrew formula metadata

## Faits du paquet

- **Clé du paquet:** brew:abricate
- **Gestionnaire de paquets:** Homebrew
- **Page du gestionnaire de paquets:** <https://formulae.brew.sh/formula/abricate>
- **Version:** 1.4.0
- **Résumé source:** Find antimicrobial resistance and virulence genes in contigs
- **Page d'accueil:** <https://github.com/tseemann/abricate>
- **Dépôt:** <https://github.com/tseemann/abricate>
- **Licence:** GPL-2.0-only
- **Archive source:** <https://github.com/tseemann/abricate/archive/refs/tags/v1.4.0.tar.gz>
- **Dernière mise à jour:** 2026-07-29T17:23:23+01:00
- **Généré:** 2026-08-04T22:13:35+00:00

## exécutables

- abricate (cli)
- abricate-get_db (cli)
- abricate (alias)
- abricate-get_db (alias)

## Dépendances

- any2fasta
- bioperl
- blast

## Bibliothèques fournies par macOS

- perl
- unzip

## Comportement d'installation

- hook post-installation: non défini
- Bouteille: disponible sur arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux

## Version et fraîcheur

- page générée: 2026-08-04
- version du gestionnaire: 1.4.0
- gestionnaire mis à jour: 2026-07-29
- données locales: OK
- dépôt amont: https://github.com/tseemann/abricate
- dernière version détectée: v1.4.0 (à jour)
## Historique du projet et usages

ABRicate is a Perl command-line tool for mass screening assembled contigs against antimicrobial-resistance and virulence-gene databases. It matters to package maintainers because it wraps BLAST+, database setup, and summary reporting into a familiar Unix bioinformatics command.

### Historique du projet

The first GitHub release, v0.1, was published as 'Debut' on April 2, 2015. The README describes the project as mass screening of contigs for antimicrobial resistance or virulence genes and explains that the name combines the common acronym ABR, for antibiotic resistance, with an English-verb-like form.

### Historique d'adoption

ABRicate became useful in workflow packaging because the README documents Bioconda installation, source installation, dependency checks, database setup, and operation through a single abricate command. The current Homebrew input metadata shows it packaged for Homebrew, while upstream also advertises Bioconda download badges.

### Modes d'utilisation

The tool screens assemblies, not raw FASTQ reads, and reports gene hits with coverage, identity, database, accession, product, and resistance fields. It can process many files, read a file-of-filenames, summarize reports into a presence/absence matrix, update bundled databases, and build custom nucleotide databases.

### Pourquoi les passionnés de paquets s'y intéressent

ABRicate is a classic bioinformatics packaging target: a Perl entry point with external command dependencies, bundled or downloadable reference databases, and a check/setup workflow that packagers and workflow engines can exercise after install. Its release history also tracks database refreshes and CI migration.

### Chronologie

- 2015: v0.1 Debut release.
- 2020: v1.0.0 added file-of-filenames scanning, defaults around coverage/identity thresholds, MEGARES docs, and NCBI/CARD database support.
- 2025: v1.2.0 refreshed databases, moved CI to GitHub Actions, switched download code to Perl File::Fetch, and improved docs.
- 2026: v1.4.0 added a UPEC/ExPEC virulence-factors database and updated NCBI AMR data.

### Related projects

- The README points users to ARIBA, ResFinder, RGI, SRST2, and AMRFinderPlus when ABRicate is not the right fit. It also bundles or references databases including NCBI AMRFinderPlus, CARD, ResFinder, ARG-ANNOT, MEGARES, PlasmidFinder, VFDB, VICTORS, BacMet, and UPEC/ExPEC VF.

### Sources

- <https://github.com/tseemann/abricate#readme>
- <https://github.com/tseemann/abricate/releases>
- input source_facts.package-manager


## Notes de sécurité

narrow executable package without higher-risk signals.

- **Risque Geiger:** vert / faible
- narrow executable package without higher-risk signals

## Détails de la base source

- **Source Database:** Homebrew formula API
- **Tap:** homebrew/core
- **Full Name:** abricate
- **Version Scheme:** 0
- **Revision:** 0
- **Head Version:** HEAD
- **Bottle Stable Root URL:** <https://ghcr.io/v2/homebrew/core>
- **Deprecated:** no
- **Disabled:** no
- **Keg Only:** no
- **URL Keys:** head, stable


## Liens liés

- [Source-control packages](https://pkg.so/fr/source-control-tools/) - Belongs to a source-control command family.
- [Terminal utility packages](https://pkg.so/fr/terminal-utilities/) - Matched terminal and command-line workflow metadata.
- [Networking and protocol packages](https://pkg.so/fr/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata.
- [Scientific computing packages](https://pkg.so/fr/scientific-computing-tools/) - Matched scientific computing metadata.
- [blast](https://pkg.so/fr/brew/blast/) - Runtime dependency declared by Homebrew.
- [bioperl](https://pkg.so/fr/brew/bioperl/) - Runtime dependency declared by Homebrew.
- [any2fasta](https://pkg.so/fr/brew/any2fasta/) - Runtime dependency declared by Homebrew.
- [samtools](https://pkg.so/fr/brew/samtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [bedtools](https://pkg.so/fr/brew/bedtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [minimap2](https://pkg.so/fr/brew/minimap2/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [bbtools](https://pkg.so/fr/brew/bbtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [sambamba](https://pkg.so/fr/brew/sambamba/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [picard-tools](https://pkg.so/fr/brew/picard-tools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [bamtools](https://pkg.so/fr/brew/bamtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science.
- [skani](https://pkg.so/fr/brew/skani/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, contigs, genomics, science.

## Combined YAML source

View the package source record on GitHub. [combined/abricate.yml](https://github.com/mxcl/pkgdb/blob/main/combined/abricate.yml)


## Sources

- pkg.so package database
- Geiger risk classifier
- package-page enrichment
- curated package history
- package version freshness
- pkgdb category and tag curation
- package relationship graph
- cross-ecosystem install command graph