sylph mit Homebrew installieren

Projektlinks

• Homepage

Befehle und Aliase

• sylph

Projektgeschichte

The official documentation describes sylph as a program for metagenomic profiling and containment ANI querying. Its core method uses k-mer containment with a statistical technique for low-coverage genomes, and the documentation cites the 2024 Nature Biotechnology paper by Jim Shaw and Yun William Yu.

Adoptionsgeschichte

The upstream README and documentation document installation through Bioconda, source builds with Rust/Cargo, and prebuilt x86-64 Linux binaries; the input package facts show Homebrew packaging as well. That mix reflects a bioinformatics CLI moving through both scientific package channels and general-purpose developer package managers.

Wie es verwendet wird

Common usage is to run sylph profile against a prebuilt or custom database, such as GTDB, with paired-end or single-end FASTQ files, or to run ANI querying to test whether a sample contains a genome related to a queried reference. The docs emphasize fast multi-sample profiling, custom databases, prebuilt databases, and support for short or long reads.

Warum Paket-Nerds sich dafür interessieren

Package nerds care because sylph is a modern scientific CLI distributed as a Rust binary: it needs reproducible installation, large external databases, predictable CPU/RAM behavior, and channels such as Bioconda and Homebrew to reach different user communities.

Zeitleiste

• 2024: Official documentation cites the sylph Nature Biotechnology paper by Jim Shaw and Yun William Yu.
• Current README era: The GitHub README says all documentation moved to sylph-docs.github.io.
• Homebrew packaging: The input package facts identify sylph as a Homebrew formula exposing the sylph executable.

Related projects

• Related tools and references named by the official docs include Kraken, MetaPhlAn, mOTUs, GTDB databases, Bioconda, Rust/Cargo, and sylph-tax.

Quellen

• https://github.com/bluenote-1577/sylph
• https://github.com/bluenote-1577/sylph/blob/main/README.md
• https://sylph-docs.github.io/
• source_facts.executables
• source_facts.package-manager