# snakemake mit Homebrew, apt, Nix installieren

Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für snakemake in AI-Agent-Workflows.

## Installation

```sh
sudo av install brew:snakemake
```

Weitere Installationsbefehle:

### macOS

- Homebrew (100%):

```sh
brew install snakemake
```

  Evidenz: local Homebrew formula metadata

### Linux

- Debian apt (92%):

```sh
sudo apt install snakemake
```

  Evidenz: Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz

- Nix (92%):

```sh
nix profile install nixpkgs#snakemake
```

  Evidenz: nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1

## Paketfakten

- **Paketschlüssel:** brew:snakemake
- **Paketmanager:** Homebrew
- **Version:** 9.24.0
- **Quellzusammenfassung:** Pythonic workflow system
- **Homepage:** <https://snakemake.readthedocs.io/>
- **Repository:** <https://github.com/snakemake/snakemake>
- **Zuletzt aktualisiert:** 2026-07-31T14:26:29Z
- **Generiert:** 2026-08-03T19:37:03+00:00

## Executables

- snakemake (Alias)

## Installationsverhalten

- Bottle: nicht verfügbar

## Version und Aktualität

- Seite generiert: 2026-08-03
- Manager-Version: 9.24.0
## Projektgeschichte und Nutzung

Snakemake is a Python-based workflow management system for reproducible and scalable data analyses, especially common in bioinformatics and scientific computing.

### Projektgeschichte

The official citation page identifies the initial Snakemake publication as a 2012 Bioinformatics article, followed by a 2021 rolling paper for ongoing feature updates. The official GitHub README describes Snakemake workflows as human-readable, Python-based definitions that scale from local machines to server, cluster, grid, and cloud environments.

### Adoptionsgeschichte

The official README reports that Snakemake was receiving more than seven new citations per week in 2021 and had almost 400k downloads at that time. The supplied metadata shows distribution through Homebrew, Debian, Ubuntu, Fedora/DNF, and Nix.

### Wie es verwendet wird

Users describe workflows in Snakefiles, define rules, inputs, outputs, and software environments, and run snakemake to build requested targets. The official deployment docs recommend a repository layout with workflow code under workflow/ and configuration under config/, including config/config.yaml examples.

### Warum Paket-Nerds sich dafür interessieren

Snakemake is significant for package maintainers because it bridges language-level workflow definitions, reproducible software deployment, Conda/container integration, and distribution through multiple OS package managers.

### Zeitleiste

- 2012: Initial Snakemake paper published in Bioinformatics.
- 2019: Current official GitHub repository created.
- 2021: Sustainable data analysis with Snakemake rolling paper published.
- 2024: Snakemake 8 release line decomposes functionality into plugins.
- 2026: Stable documentation tracks Snakemake 9.x.

### Related projects

- Snakemake workflow catalog
- Snakemake wrappers
- Snakemake executor plugins
- Conda
- Apptainer

### Quellen

- <https://api.github.com/repos/snakemake/snakemake>
- <https://github.com/snakemake/snakemake>
- <https://github.com/snakemake/snakemake/blob/main/docs/project_info/citations.rst>
- <https://github.com/snakemake/snakemake/blob/main/docs/snakefiles/deployment.rst>
- <https://snakemake.readthedocs.io/en/stable/project_info/history.html>
- input source_facts.package-manager


## Sicherheitshinweise

Für snakemake wurde kein passendes lokales Secret-Handling-Manifest gefunden. Nucleus-Paketmetadaten bleiben hier veröffentlicht, damit künftige Abdeckung eine stabile Paket-URL hat.



## Configuration and credential file locations

These source-backed paths show where this package keeps local settings or durable credentials. Automic Vault can use them as review targets for secret scanning, migration, and command approval.


## Configuration files

- Unix: config/config.yaml
## Andere Paketmanager-Einträge

- Debian apt - snakemake - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | pythonic workflow management system | https://snakemake.readthedocs.io/
- Debian apt - snakemake-doc - 7.32.4-7: normalized package name match | Debian stable package indexes: snakemake-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/
- Nix - snakemake: normalized package name match | nixpkgs package indexes: pkgs/by-name/sn/snakemake/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1
- Ubuntu apt - snakemake - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | pythonic workflow management system | https://snakemake.readthedocs.io/
- Ubuntu apt - snakemake-doc - 7.32.4-2: normalized package name match | Ubuntu 24.04 LTS package indexes: snakemake-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | documentation for pythonic workflow management system | https://snakemake.readthedocs.io/


## Combined YAML source

View the package source record on GitHub. [combined/snakemake.yml](https://github.com/mxcl/pkgdb/blob/main/combined/snakemake.yml)


## Quellen

- pkg.so package database
- Geiger risk classifier
- curated configuration and credential file locations
- curated package history
- pkgdb category and tag curation
- external package-manager database matches
- cross-ecosystem install command graph