# miniprot mit Homebrew installieren Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für miniprot in AI-Agent-Workflows. ## Installation ```sh sudo av install brew:miniprot ``` Weitere Installationsbefehle: ### macOS - Homebrew (100%): ```sh brew install miniprot ``` Evidenz: local Homebrew formula metadata ## Paketfakten - **Paketschlüssel:** brew:miniprot - **Paketmanager:** Homebrew - **Paketmanager-Seite:** - **Version:** 0.18 - **Quellzusammenfassung:** Align proteins to genomes with splicing and frameshift - **Homepage:** - **Repository:** - **Upstream-Dokumentation:** - **Lizenz:** MIT - **Quellarchiv:** - **Generiert:** 2026-08-04T22:13:35+00:00 ## Executables - miniprot (cli) - miniprot (Alias) ## Installationsverhalten - Post-install-Hook: nicht definiert - Bottle: verfügbar auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version und Aktualität - Seite generiert: 2026-08-04 - Manager-Version: 0.18 - lokale Daten: OK - Upstream-Repository: https://github.com/lh3/miniprot - neueste erkannte Version: v0.18 (aktuell) - Info: No package-manager update timestamp was available. ## Projektgeschichte und Nutzung miniprot is Heng Li's protein-to-genome aligner for genome annotation. The preprint appeared in 2022 and the Bioinformatics paper was published in 2023, describing miniprot as a new aligner for mapping protein sequences to complete genomes with k-mer sketching and vectorized dynamic programming. ### Projektgeschichte The program fills a bioinformatics gap between older tools such as GeneWise and Exonerate and the scale of modern genome projects. Its README says it aligns protein sequences against genomes with affine gap penalties, splicing, and frameshifts, primarily to annotate protein-coding genes in a new species using known genes from other species. It can build a genome index, output protein PAF, emit GFF3 with embedded PAF, and optionally use splice scores from minisplice. ### Wie es verwendet wird Adoption is source-backed through bioinformatics workflows rather than general-purpose package popularity. BUSCO's user guide lists miniprot among third-party tools to cite, and the GALBA genome-annotation pipeline paper describes genome annotation with miniprot and AUGUSTUS. Homebrew packages it as a single `miniprot` executable for the scientific-command-line niche, alongside Bioconda-style distribution and upstream source builds. ### Quellen - - - - - - - ## Sicherheitshinweise narrow executable package without higher-risk signals. - **Geiger-Risiko:** grün / niedrig - narrow executable package without higher-risk signals ## Details aus der Quelldatenbank - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** miniprot - **Version Scheme:** 0 - **Revision:** 0 - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** stable ## Verwandte Links - [Source-control packages](https://pkg.so/de/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://pkg.so/de/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://pkg.so/de/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://pkg.so/de/scientific-computing-tools/) - Matched scientific computing metadata. - [samtools](https://pkg.so/de/brew/samtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [blast](https://pkg.so/de/brew/blast/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [bedtools](https://pkg.so/de/brew/bedtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [minimap2](https://pkg.so/de/brew/minimap2/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [bbtools](https://pkg.so/de/brew/bbtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [sambamba](https://pkg.so/de/brew/sambamba/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [abricate](https://pkg.so/de/brew/abricate/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [picard-tools](https://pkg.so/de/brew/picard-tools/) - Shares pkgdb curated category or tags: bioinformatics, cli, genomics, science. - [minigraph](https://pkg.so/de/brew/minigraph/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, genomics, mapping, science. - [mummer](https://pkg.so/de/brew/mummer/) - Local package facts share a topical domain. Shared terms: alignment, bioinformatics, cli, genomics, protein. ## Combined YAML source View the package source record on GitHub. [combined/miniprot.yml](https://github.com/mxcl/pkgdb/blob/main/combined/miniprot.yml) ## Quellen - pkg.so package database - Geiger risk classifier - package-page enrichment - curated package history - package version freshness - pkgdb category and tag curation - package relationship graph - cross-ecosystem install command graph