# fastani mit Homebrew, apt installieren Prüfe Installationswege, Executables, Metadaten und Sicherheitshinweise für fastani in AI-Agent-Workflows. ## Installation ```sh sudo av install brew:fastani ``` Weitere Installationsbefehle: ### macOS - Homebrew (100%): ```sh brew install fastani ``` Evidenz: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install fastani ``` Evidenz: Debian stable package indexes: fastani from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz ## Paketfakten - **Paketschlüssel:** brew:fastani - **Paketmanager:** Homebrew - **Paketmanager-Seite:** - **Version:** 1.34 - **Quellzusammenfassung:** Fast whole-genome similarity (ANI) estimation - **Homepage:** - **Repository:** - **Lizenz:** Apache-2.0 - **Quellarchiv:** - **Zuletzt aktualisiert:** 2026-07-25T01:07:37Z - **Generiert:** 2026-08-04T22:13:35+00:00 ## Executables - fastANI (cli) - fastANI (Alias) ## Abhängigkeiten - gsl - libomp ## Build-Abhängigkeiten - cmake ## Installationsverhalten - Post-install-Hook: nicht definiert - Bottle: verfügbar auf arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Version und Aktualität - Seite generiert: 2026-08-04 - Manager-Version: 1.34 - Manager aktualisiert: 2026-07-25 - lokale Daten: OK - Upstream-Repository: https://github.com/ParBLiSS/FastANI - neueste erkannte Version: v1.34 (aktuell) ## Projektgeschichte und Nutzung FastANI is a command-line bioinformatics tool for rapidly estimating average nucleotide identity between complete or draft microbial genomes. It replaces expensive all-against-all alignments with approximate sequence mapping, making ANI practical for large genome collections. ### Projektgeschichte The official FastANI repository was created in 2017. FastANI uses Mashmap as a MinHash-based sequence mapping engine and follows the broad workflow of earlier ANI methods while avoiding their expensive sequence-alignment step. The associated 2018 Nature Communications paper introduced FastANI as a scalable ANI method and used it to analyze more than 90,000 prokaryotic genomes. The study reported accuracy comparable to alignment-based ANI methods in the intended similarity range with speedups of two to three orders of magnitude. ### Adoptionsgeschichte FastANI became a practical command-line component in microbial genomics because it accepts both complete and draft assemblies and supports one-to-one, one-to-many, and many-to-many comparisons. The supplied package metadata shows distribution through Homebrew, Debian, and Ubuntu, complementing upstream source builds and release binaries. ### Wie es verwendet wird Users provide a query genome and reference genome, or text files listing multiple query and reference assemblies. FastANI writes tab-delimited ANI results and can optionally generate a lower-triangular PHYLIP-style matrix. The official README recommends checking assembly quality and notes that pairs far below roughly 80 percent ANI are outside FastANI's useful nucleotide-level range. It also documents multi-threading and a small query/reference asymmetry in pairwise estimates. ### Warum Paket-Nerds sich dafür interessieren FastANI matters to package users because it turns a computationally expensive comparative-genomics method into a scriptable executable suitable for large batches. Its small CLI surface, release binaries, and Linux and macOS package availability make it easy to place inside reproducible genome-classification pipelines. ### Zeitleiste - 2017: The official FastANI GitHub repository was created. - 2018: The FastANI method and analysis of more than 90,000 prokaryotic genomes were published in Nature Communications. - 2023: FastANI v1.34 was published through the official GitHub releases feed. ### Related projects - Mashmap is the approximate mapping engine used by FastANI. - Mash is another MinHash-based genome-distance tool discussed in the FastANI paper, while BLAST-based ANI solvers are the slower alignment-based comparison point. ### Quellen - - - - source_facts.package-manager ## Sicherheitshinweise Für fastani wurde kein passendes lokales Secret-Handling-Manifest gefunden. Paketmetadaten bleiben hier veröffentlicht, damit künftige Abdeckung eine stabile Paket-URL hat. ## Details aus der Quelldatenbank - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** fastani - **Version Scheme:** 0 - **Revision:** 0 - **Head Version:** HEAD - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** head, stable ## Andere Paketmanager-Einträge - Debian apt - fastani - 1.33-3+b1: normalized package name match | Debian stable package indexes: fastani from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Fast alignment-free computation of whole-genome Average Nucleotide Identity | https://github.com/ParBLiSS/FastANI - Ubuntu apt - fastani - 1.33-3: normalized package name match | Ubuntu 24.04 LTS package indexes: fastani from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Fast alignment-free computation of whole-genome Average Nucleotide Identity | https://github.com/ParBLiSS/FastANI ## Verwandte Links - [Source-control packages](https://pkg.so/de/source-control-tools/) - Belongs to a source-control command family. - [Networking and protocol packages](https://pkg.so/de/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://pkg.so/de/scientific-computing-tools/) - Matched scientific computing metadata. - [gsl](https://pkg.so/de/brew/gsl/) - Runtime dependency declared by Homebrew. - [cmake](https://pkg.so/de/brew/cmake/) - Build dependency declared by Homebrew. - [kalign](https://pkg.so/de/brew/kalign/) - Local package facts share a topical domain. Shared terms: fast, libomp. - [primecount](https://pkg.so/de/brew/primecount/) - Local package facts share a topical domain. Shared terms: fast, libomp. - [astrometry-net](https://pkg.so/de/brew/astrometry-net/) - Local package facts share a topical domain. Shared terms: gsl. ## Combined YAML source View the package source record on GitHub. [combined/fastani.yml](https://github.com/mxcl/pkgdb/blob/main/combined/fastani.yml) ## Quellen - pkg.so package database - package-page enrichment - curated package history - package version freshness - package relationship graph - external package-manager database matches - cross-ecosystem install command graph