# Install paml with Homebrew, apt, Nix Phylogenetic analyses of DNA or protein sequences using maximum likelihood. Version 4.10.10 via Homebrew; verified from local package data. Also installable with debian: sudo apt install paml. ## Install ```sh sudo av install brew:paml ``` Additional install commands: ### macOS - Homebrew (100%): ```sh brew install paml ``` Evidence: local Homebrew formula metadata ### Linux - Debian apt (92%): ```sh sudo apt install paml ``` Evidence: Debian stable package indexes: paml from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz - Nix (92%): ```sh nix profile install nixpkgs#paml ``` Evidence: nixpkgs package indexes: pkgs/by-name/pa/paml/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 ## Package facts - **Package key:** brew:paml - **Package manager:** Homebrew - **Package manager page:** - **Version:** 4.10.10 - **Source summary:** Phylogenetic analyses of DNA or protein sequences using maximum likelihood - **Homepage:** - **Repository:** - **License:** GPL-3.0-only - **Source archive:** - **Generated:** 2026-08-04T22:13:35+00:00 ## Executables - baseml (cli) - basemlg (cli) - chi2 (cli) - codeml (cli) - evolver (cli) - infinitesites (cli) - mcmctree (cli) - pamp (cli) - yn00 (cli) - baseml (alias) - basemlg (alias) - chi2 (alias) - codeml (alias) - evolver (alias) - infinitesites (alias) - mcmctree (alias) - pamp (alias) - yn00 (alias) ## Install behavior - Post-install hook: not defined - Bottle: available on arm64_linux, arm64_sequoia, arm64_sonoma, arm64_tahoe, sonoma, x86_64_linux ## Freshness - Page generated: 2026-08-04 - Package-manager version: 4.10.10 - Local data: ok - Upstream repository: https://github.com/abacus-gene/paml - Upstream latest detected: v4.10.10 (current) - info: No package-manager update timestamp was available. ## Security Notes narrow executable package without higher-risk signals. - **Geiger risk:** green / low - narrow executable package without higher-risk signals ## Source Database Details - **Source Database:** Homebrew formula API - **Tap:** homebrew/core - **Full Name:** paml - **Version Scheme:** 0 - **Revision:** 0 - **Bottle Stable Root URL:** - **Deprecated:** no - **Disabled:** no - **Keg Only:** no - **URL Keys:** stable ## Other Package-Manager Records - Debian apt - paml - 4.9j+dfsg-6: normalized package name match | Debian stable package indexes: paml from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Phylogenetic Analysis by Maximum Likelihood (PAML) | http://abacus.gene.ucl.ac.uk/software/paml.html - Debian apt - paml-doc - 4.9j+dfsg-6: normalized package name match | Debian stable package indexes: paml-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Documentation for PAML | http://abacus.gene.ucl.ac.uk/software/paml.html - Nix - paml: normalized package name match | nixpkgs package indexes: pkgs/by-name/pa/paml/package.nix from https://api.github.com/repos/NixOS/nixpkgs/git/trees/master?recursive=1 - Ubuntu apt - paml - 4.9j+dfsg-4: normalized package name match | Ubuntu 24.04 LTS package indexes: paml from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Phylogenetic Analysis by Maximum Likelihood (PAML) | http://abacus.gene.ucl.ac.uk/software/paml.html - Ubuntu apt - paml-doc - 4.9j+dfsg-4: normalized package name match | Ubuntu 24.04 LTS package indexes: paml-doc from https://archive.ubuntu.com/ubuntu/dists/noble/universe/binary-amd64/Packages.gz | Documentation for PAML | http://abacus.gene.ucl.ac.uk/software/paml.html - Debian apt - evolver - 2.70+ds-8: installed executable or alias match | Debian stable package indexes: evolver from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver | https://facstaff.susqu.edu/brakke/evolver/evolver.html - Debian apt - evolver-doc - 2.70+ds-8: installed executable or alias match | Debian stable package indexes: evolver-doc from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver - doc | https://facstaff.susqu.edu/brakke/evolver/evolver.html - Debian apt - evolver-nox - 2.70+ds-8+b2: installed executable or alias match | Debian stable package indexes: evolver-nox from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver - with no X support | https://facstaff.susqu.edu/brakke/evolver/evolver.html - Debian apt - evolver-ogl - 2.70+ds-8+b2: installed executable or alias match | Debian stable package indexes: evolver-ogl from https://deb.debian.org/debian/dists/stable/main/binary-amd64/Packages.xz | Surface Evolver - with OpenGL display | https://facstaff.susqu.edu/brakke/evolver/evolver.html ## Related links - [Source-control packages](https://pkg.so/source-control-tools/) - Belongs to a source-control command family. - [Terminal utility packages](https://pkg.so/terminal-utilities/) - Matched terminal and command-line workflow metadata. - [Networking and protocol packages](https://pkg.so/networking-protocol-tools/) - Matched network, protocol, or remote-service metadata. - [Scientific computing packages](https://pkg.so/scientific-computing-tools/) - Matched scientific computing metadata. - [fastme](https://pkg.so/brew/fastme/) - Shares pkgdb curated category or tags: bioinformatics, cli, phylogenetics, science. - [raxml-ng](https://pkg.so/brew/raxml-ng/) - Shares pkgdb curated category or tags: bioinformatics, cli, maximum-likelihood, phylogenetics, science. - [mmseqs2](https://pkg.so/brew/mmseqs2/) - Shares pkgdb curated category or tags: bioinformatics, cli, protein-sequences, science. - [minimap2](https://pkg.so/brew/minimap2/) - Shares pkgdb curated category or tags: bioinformatics, cli, dna, science. - [bbtools](https://pkg.so/brew/bbtools/) - Shares pkgdb curated category or tags: bioinformatics, cli, dna, science. - [bwa](https://pkg.so/brew/bwa/) - Shares pkgdb curated category or tags: bioinformatics, cli, dna, science. - [mrbayes](https://pkg.so/brew/mrbayes/) - Shares pkgdb curated category or tags: bioinformatics, cli, phylogenetics, science. - [breseq](https://pkg.so/brew/breseq/) - Shares pkgdb curated category or tags: bioinformatics, cli, dna, science. - [kalign](https://pkg.so/brew/kalign/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, dna, protein, science. - [mummer](https://pkg.so/brew/mummer/) - Local package facts share a topical domain. Shared terms: bioinformatics, cli, dna, protein, science. ## Combined YAML source View the package source record on GitHub. [combined/paml.yml](https://github.com/mxcl/pkgdb/blob/main/combined/paml.yml) ## Sources - pkg.so package database - Geiger risk classifier - package-page enrichment - package version freshness - pkgdb category and tag curation - package relationship graph - external package-manager database matches - cross-ecosystem install command graph